KEGG 00360 Phenylalanine metabolism
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00360 Phenylalanine metabolism 11
ath00350 Tyrosine metabolism 7
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ath01230 Biosynthesis of amino acids 7
ath00950 Isoquinoline alkaloid biosynthesis 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00360 Phenylalanine metabolism 27
gma00350 Tyrosine metabolism 14
gma00950 Isoquinoline alkaloid biosynthesis 13
gma00960 Tropane, piperidine and pyridine alkaloid biosynthesis 11
gma00940 Phenylpropanoid biosynthesis 10
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00360 Phenylalanine metabolism 15
sly01230 Biosynthesis of amino acids 6
sly00940 Phenylpropanoid biosynthesis 6
sly00350 Tyrosine metabolism 4
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00360 Phenylalanine metabolism 14
osa00350 Tyrosine metabolism 8
osa00940 Phenylpropanoid biosynthesis 8
osa00950 Isoquinoline alkaloid biosynthesis 7
osa00960 Tropane, piperidine and pyridine alkaloid biosynthesis 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00360 Phenylalanine metabolism 15
zma00940 Phenylpropanoid biosynthesis 8
zma00350 Tyrosine metabolism 7
zma00950 Isoquinoline alkaloid biosynthesis 6
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 9
bra00360 Phenylalanine metabolism 8
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bra01230 Biosynthesis of amino acids 3
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00360 Phenylalanine metabolism 10
vvi00940 Phenylpropanoid biosynthesis 5
vvi00350 Tyrosine metabolism 5
vvi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 5
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00360 Phenylalanine metabolism 11
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ppo01230 Biosynthesis of amino acids 8
ppo00350 Tyrosine metabolism 7
ppo00950 Isoquinoline alkaloid biosynthesis 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00360 Phenylalanine metabolism 4
mtr00940 Phenylpropanoid biosynthesis 4
Gene list in the network
Symbol Function*
AAT aspartate aminotransferase
C4H cinnamate-4-hydroxylase
ASP1 aspartate aminotransferase 1
PKT3 peroxisomal 3-ketoacyl-CoA thiolase 3
PAL1 PHE ammonia lyase 1
PHT4;2 phosphate transporter 4;2
MFP2 multifunctional protein 2
PAL4 phenylalanine ammonia-lyase 4
PAL2 phenylalanine ammonia-lyase 2
ECHIA enoyl-CoA hydratase/isomerase A
ASP5 aspartate aminotransferase 5
ASP3 aspartate aminotransferase 3
AT5G36160 Tyrosine transaminase family protein
TAT7 Tyrosine transaminase family protein
AT1G06550 ATP-dependent caseinolytic (Clp) protease/crotonase family protein
PDS1 4-hydroxyphenylpyruvate dioxygenase
AT1G22410 Class-II DAHP synthetase family protein
4CL1 4-coumarate:CoA ligase 1
GSTU16 glutathione S-transferase TAU 16
Symbol Function*
PAO1 peroxisomal copper-containing amine oxidase
LOC547792 aspartate aminotransferase
4CL2 4-coumarate--CoA ligase 2
DAO copper amino oxidase
LOC732570 chorismate synthase
LOC732650 tyrosine aminotransferase
HPPD 4-hydroxyphenylpyruvate dioxygenase
PDIL-2 protein disulfide isomerase-like protein
LOC100170725 peroxisomal enoyl-CoA hydratase/isomerase family protein
LOC100170753 peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein
PAL2.1 phenylalanine ammonia-lyase 2.1
LOC100500611 cytochrome b5
LOC100776446 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
LOC100777958 flavin-containing monooxygenase YUCCA10-like
LOC100779281 uncharacterized LOC100779281
LOC100780821 amidase 1
LOC100783091 copper methylamine oxidase
LOC100784392 probable aminotransferase TAT2
LOC100785132 probable aminotransferase TAT2
LOC100787822 tyrosine/DOPA decarboxylase 2
PAL3.1 phenylalanine ammonia-lyase 3.1
PAL1.3 phenylalanine ammonia-lyase 1
PAL1.2 phenylalanine ammonia-lyase 1
LOC100794606 pentatricopeptide repeat-containing protein At5g02830, chloroplastic
LOC100795274 tyrosine/DOPA decarboxylase 2
LOC100798399 primary amine oxidase
LOC100800777 BURP domain-containing protein BNM2A
LOC100801361 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
PAL2.4 phenylalanine ammonia-lyase 2.4
PAL2.3 phenylalanine ammonia-lyase 2.3
LOC100807674 amidase 1
LOC100809788 probable enoyl-CoA hydratase 1, peroxisomal
PAL1.1 phenylalanine ammonia-lyase 1.1
LOC100811514 aspartate aminotransferase P2, mitochondrial
PAL2.2 phenylalanine ammonia-lyase 2.2
LOC100818985 trans-cinnamate 4-monooxygenase
Symbol Function*
Man4 mannan endo-1,4-beta-mannosidase
hdc histidine decarboxylase
AADC2 aromatic amino acid decarboxylase 2
PAT prephenate aminotransferase
LOC101243656 phenylalanine ammonia-lyase 6
PAL3 phenylalanine ammonia-lyase 3
PAL5 phenylalanine ammonia-lyase 5
LOC101248029 histidine decarboxylase
LOC101249664 histidine decarboxylase
PAL2 phenylalanine ammonia-lyase 2
MKS1d methylketone synthase Id
LOC101252192 LL-diaminopimelate aminotransferase, chloroplastic
LOC101258356 pectinesterase inhibitor-like
LOC101258500 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
LOC101260925 histidinol-phosphate aminotransferase, chloroplastic
LOC101261642 aspartate aminotransferase, chloroplastic
LOC101261892 phenylalanine ammonia-lyase 1
LOC101263431 tryptophan decarboxylase TDC1-like
LOC101264818 serine hydroxymethyltransferase, mitochondrial
LOC101265461 histidine decarboxylase-like
LOC101267512 kirola-like
LOC101267934 protein ECERIFERUM 1-like
LOC101268378 kirola-like
LOC109119559 uncharacterized LOC109119559
RIP1 Ripening induced protein
LOC112941051 phenylalanine ammonia-lyase-like
Symbol Function*
LOC4325621 aspartate aminotransferase, cytoplasmic-like
LOC4328425 4-hydroxyphenylpyruvate dioxygenase
LOC4328485 probable 4-coumarate--CoA ligase 3
LOC4330034 phenylalanine ammonia-lyase-like
LOC4330036 phenylalanine ammonia-lyase
LOC4330037 phenylalanine ammonia-lyase
LOC4330040 phenylalanine ammonia-lyase-like
LOC4335756 arogenate dehydratase/prephenate dehydratase 6, chloroplastic
LOC4336415 phenylalanine ammonia-lyase
LOC4338861 phenylalanine ammonia-lyase
LOC4340945 primary amine oxidase 2
LOC4341252 aspartate aminotransferase, mitochondrial
LOC4343673 primary amine oxidase 2
LOC4344636 tryptophan decarboxylase 1-like
LOC4344637 tryptophan decarboxylase 1-like
LOC4344702 flavone 3'-O-methyltransferase 1-like
LOC4345717 probable 4-coumarate--CoA ligase 5
LOC4346129 nucleotide pyrophosphatase/phosphodiesterase
LOC4347679 protein ODORANT1
LOC4348524 alanine aminotransferase 2
LOC4351017 probable aminotransferase TAT2
Symbol Function*
LOC542258 phenylalanine ammonia lyase 3
LOC606444 4-hydroxyphenylpyruvate dioxygenase 1
LOC100191335 ferric-chelate reductase (NADH)1
LOC100191757 uncharacterized LOC100191757
LOC100191816 S-alkyl-thiohydroximate lyase SUR1
LOC100272801 putative cytochrome P450 superfamily protein
LOC100273579 phenylalanine ammonia lyase9
LOC100274119 aspartate aminotransferase
LOC100274472 uncharacterized LOC100274472
LOC100279205 uncharacterized LOC100279205
LOC100279950 Tyrosine decarboxylase 1
LOC100281042 phenylalanine ammonia-lyase
LOC100281532 phenylalanine ammonia-lyase
LOC100282080 anthocyanidin 3-O-glucosyltransferase
LOC100285115 phenylalanine ammonia-lyase
LOC100381820 phenylalanine ammonia-lyase
LOC100383025 Tyrosine decarboxylase 1
LOC100383097 hydroxycinnamoyltransferase2
LOC100384215 phenylalanine ammonia lyase2
LOC100384731 Amidase 1
LOC103627433 phenylalanine ammonia-lyase
LOC103627746 putative laccase-9
Symbol Function*
LOC103829920 phenylalanine ammonia-lyase 2-like
LOC103837205 chorismate mutase 1, chloroplastic-like
LOC103837904 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
LOC103841251 phenylalanine ammonia-lyase 2
LOC103849325 phenylalanine ammonia-lyase 2-like
LOC103857323 trans-cinnamate 4-monooxygenase-like
LOC103864337 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like
LOC103865043 trans-cinnamate 4-monooxygenase-like
LOC103865574 phenylalanine ammonia-lyase 1
LOC103867229 phenylalanine ammonia-lyase 1
LOC103867954 trans-cinnamate 4-monooxygenase
LOC103870475 phenylalanine ammonia-lyase 4
Symbol Function*
CHS chalcone synthase
LOC100232912 5-enolpyruvylshikimate-3-phosphate synthase
LOC100233012 phenylalanine ammonia-lyase G1
LOC100241377 phenylalanine ammonia-lyase
LOC100241575 phenylalanine ammonia-lyase-like
LOC100245826 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
LOC100251137 phenylalanine ammonia-lyase
LOC100251211 primary amine oxidase
LOC100255576 histidinol-phosphate aminotransferase, chloroplastic
LOC100256366 primary amine oxidase
LOC100261782 caffeoylshikimate esterase
LOC100266593 phenylalanine ammonia-lyase
LOC100853675 stilbene synthase 4
LOC104882479 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
Symbol Function*
LOC7453965 3-phosphoshikimate 1-carboxyvinyltransferase 2
LOC7455972 formate dehydrogenase, mitochondrial
LOC7457872 chorismate synthase, chloroplastic
LOC7458772 aspartate aminotransferase, cytoplasmic
LOC7462312 probable aminotransferase TAT2
LOC7468079 aspartate aminotransferase, mitochondrial
LOC7471529 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
LOC7471542 aspartate aminotransferase, cytoplasmic
LOC7472143 probable amidase At4g34880
LOC7472319 pyruvate decarboxylase 1
LOC7477870 probable amidase At4g34880
LOC7479878 phenylalanine ammonia-lyase G4
LOC7480718 4-hydroxyphenylpyruvate dioxygenase
LOC7486485 phenylalanine ammonia-lyase
LOC7490231 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
LOC7496858 catalase isozyme 1
Symbol Function*
LOC11414166 phenylalanine ammonia-lyase 2
LOC11434138 phenylalanine ammonia-lyase
LOC25499316 phenylalanine ammonia-lyase
LOC25499317 phenylalanine ammonia-lyase


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