KEGG 00670 One carbon pool by folate
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00670 One carbon pool by folate 9
ath01200 Carbon metabolism 6
ath01230 Biosynthesis of amino acids 6
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00260 Glycine, serine and threonine metabolism 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00670 One carbon pool by folate 21
gma01200 Carbon metabolism 15
gma01230 Biosynthesis of amino acids 11
gma00260 Glycine, serine and threonine metabolism 11
gma00630 Glyoxylate and dicarboxylate metabolism 11
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00670 One carbon pool by folate 9
sly01200 Carbon metabolism 7
sly01230 Biosynthesis of amino acids 7
sly00260 Glycine, serine and threonine metabolism 5
sly00460 Cyanoamino acid metabolism 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00670 One carbon pool by folate 4
osa01200 Carbon metabolism 4
osa00260 Glycine, serine and threonine metabolism 3
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa01230 Biosynthesis of amino acids 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00670 One carbon pool by folate 6
zma01230 Biosynthesis of amino acids 6
zma01200 Carbon metabolism 5
zma00270 Cysteine and methionine metabolism 4
zma00260 Glycine, serine and threonine metabolism 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 11
bra00670 One carbon pool by folate 10
bra01230 Biosynthesis of amino acids 8
bra00260 Glycine, serine and threonine metabolism 7
bra00630 Glyoxylate and dicarboxylate metabolism 7
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00670 One carbon pool by folate 8
vvi01200 Carbon metabolism 8
vvi00260 Glycine, serine and threonine metabolism 6
vvi00630 Glyoxylate and dicarboxylate metabolism 6
vvi01230 Biosynthesis of amino acids 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 7
mtr01230 Biosynthesis of amino acids 7
mtr00670 One carbon pool by folate 6
mtr00260 Glycine, serine and threonine metabolism 5
mtr00630 Glyoxylate and dicarboxylate metabolism 5
Gene list in the network
Symbol Function*
AT2G35040 AICARFT/IMPCHase bienzyme family protein
MTHFR2 methylenetetrahydrofolate reductase 2
MTHFR1 methylenetetrahydrofolate reductase 1
SHM4 serine hydroxymethyltransferase 4
AT-HF HIS HF
SHM3 serine hydroxymethyltransferase 3
THY-2 thymidylate synthase 2
SHM1 serine transhydroxymethyltransferase 1
ATMS1 Cobalamin-independent synthase family protein
GS2 glutamine synthetase 2
AT1G11860 Glycine cleavage T-protein family
EMB3108 DEA(D/H)-box RNA helicase family protein
pde194 formyltransferase
Symbol Function*
LOC547643 methionine synthase
DHFR-TS bifunctional dihydrofolate reductase-thymidylate synthase
SHMT serine hydroxylmethyltransferase
LOC100499634 serine hydroxymethyltransferase 3
LOC100499635 serine hydroxymethyltransferase 5
LOC100776419 serine hydroxymethyltransferase 7
LOC100778188 aminomethyltransferase, mitochondrial
LOC100780260 bifunctional purine biosynthesis protein PurH
LOC100780391 adenosine kinase 2-like
LOC100780790 bifunctional purine biosynthesis protein PurH
LOC100782073 methylenetetrahydrofolate reductase 2
LOC100782213 formate--tetrahydrofolate ligase
LOC100783819 casein kinase 1-like protein HD16
LOC100786311 bifunctional dihydrofolate reductase-thymidylate synthase
LOC100786329 bifunctional dihydrofolate reductase-thymidylate synthase-like protein
LOC100788658 bifunctional dihydrofolate reductase-thymidylate synthase
LOC100793208 serine hydroxymethyltransferase 7
LOC100797489 methylenetetrahydrofolate reductase 2
LOC100799472 serine hydroxymethyltransferase 7
LOC100800496 uncharacterized LOC100800496
LOC100802039 putative cobalamin-independent methionine synthase
LOC100805188 protein SULFUR DEFICIENCY-INDUCED 1
LOC100806844 formate--tetrahydrofolate ligase
LOC100809241 aminomethyltransferase, mitochondrial
LOC100810926 serine hydroxymethyltransferase 7
LOC100812952 serine hydroxymethyltransferase, mitochondrial
LOC100815417 serine hydroxylmethyltransferase
Symbol Function*
IMPCHase putative inosine monophosphate cyclohydrolase
LOC101252648 phosphoribosylglycinamide formyltransferase, chloroplastic
LOC101255258 methylenetetrahydrofolate reductase 2
LOC101255944 phosphoribosylaminoimidazole carboxylase, chloroplastic-like
LOC101256090 serine hydroxymethyltransferase 4
LOC101259725 serine hydroxymethyltransferase 4
LOC101261642 aspartate aminotransferase, chloroplastic
LOC101263138 serine hydroxymethyltransferase 3, chloroplastic
ER69 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
LOC101264818 serine hydroxymethyltransferase, mitochondrial
LOC101265950 formate--tetrahydrofolate ligase
LOC101267301 serine hydroxymethyltransferase 3, chloroplastic-like
Symbol Function*
LOC4334048 serine hydroxymethyltransferase, mitochondrial
LOC4334554 probable methylenetetrahydrofolate reductase
LOC4337051 aminomethyltransferase, mitochondrial
LOC4350456 serine hydroxymethyltransferase 4
LOC4352832 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like
Symbol Function*
LOC541707 bifunctional dihydrofolate reductase-thymidylate synthase
LOC541714 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1
LOC541794 uncharacterized LOC541794
LOC541942 uncharacterized LOC541942
LOC100191532 serine hydroxymethyltransferase
LOC100192461 uncharacterized LOC100192461
LOC100217230 uncharacterized LOC100217230
LOC100273590 Glutathione synthetase chloroplastic
LOC100274072 pollenless 3
LOC100280688 uncharacterized LOC100280688
LOC100282457 uncharacterized LOC100282457
LOC100286018 uncharacterized LOC100286018
LOC100286146 uncharacterized LOC100286146
LOC100502188 DEAD-box ATP-dependent RNA helicase pseudogene
LOC109943750 protein RESPONSE TO LOW SULFUR 3
Symbol Function*
LOC103830238 methylenetetrahydrofolate reductase 1
LOC103833148 serine hydroxymethyltransferase 4-like
LOC103835059 serine hydroxymethyltransferase 1, mitochondrial
LOC103836204 aminomethyltransferase, mitochondrial-like
LOC103841853 methylenetetrahydrofolate reductase 1
LOC103843220 aminomethyltransferase, mitochondrial
LOC103849458 dirigent protein 19
LOC103851137 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like
LOC103853807 serine hydroxymethyltransferase 4-like
LOC103856274 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1
LOC103856643 serine hydroxymethyltransferase 1, mitochondrial-like
LOC103859466 phosphoglycerate kinase 1, chloroplastic
LOC103863581 serine hydroxymethyltransferase 4
LOC103866772 methylenetetrahydrofolate reductase 2
Symbol Function*
LOC100241225 serine hydroxymethyltransferase 7
LOC100243424 serine hydroxymethyltransferase, mitochondrial
LOC100248500 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
LOC100248779 serine hydroxymethyltransferase 4
LOC100250401 aminomethyltransferase, mitochondrial
LOC100255218 formate--tetrahydrofolate ligase
LOC100259124 probable methylenetetrahydrofolate reductase
LOC100267713 serine hydroxymethyltransferase 7
LOC100854244 serine hydroxymethyltransferase, mitochondrial
Symbol Function*
LOC11405458 serine hydroxymethyltransferase, mitochondrial
LOC11415840 serine hydroxymethyltransferase 4
LOC11419944 3-phosphoshikimate 1-carboxyvinyltransferase 2
LOC11421966 phosphoglycerate kinase 3, cytosolic
LOC11422221 alcohol dehydrogenase-like 6
LOC11429401 serine hydroxymethyltransferase, mitochondrial
LOC11437303 aminomethyltransferase, mitochondrial
LOC11439549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1
LOC11442479 serine hydroxymethyltransferase 4
LOC25482865 methylenetetrahydrofolate reductase 2


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