KEGG 00910 Nitrogen metabolism
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00910 Nitrogen metabolism 15
ath00630 Glyoxylate and dicarboxylate metabolism 9
ath01230 Biosynthesis of amino acids 6
ath00250 Alanine, aspartate and glutamate metabolism 5
ath01200 Carbon metabolism 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00910 Nitrogen metabolism 37
gma00250 Alanine, aspartate and glutamate metabolism 16
gma00220 Arginine biosynthesis 12
gma01230 Biosynthesis of amino acids 10
gma00630 Glyoxylate and dicarboxylate metabolism 8
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00910 Nitrogen metabolism 5
sly01230 Biosynthesis of amino acids 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00910 Nitrogen metabolism 12
osa00630 Glyoxylate and dicarboxylate metabolism 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00910 Nitrogen metabolism 25
zma00250 Alanine, aspartate and glutamate metabolism 7
zma01230 Biosynthesis of amino acids 7
zma00630 Glyoxylate and dicarboxylate metabolism 6
zma00220 Arginine biosynthesis 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00910 Nitrogen metabolism 23
bra00220 Arginine biosynthesis 11
bra00250 Alanine, aspartate and glutamate metabolism 11
bra00630 Glyoxylate and dicarboxylate metabolism 9
bra01230 Biosynthesis of amino acids 7
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00910 Nitrogen metabolism 7
vvi01200 Carbon metabolism 4
vvi00460 Cyanoamino acid metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00220 Arginine biosynthesis 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00910 Nitrogen metabolism 6
ppo00220 Arginine biosynthesis 3
ppo00250 Alanine, aspartate and glutamate metabolism 3
ppo01200 Carbon metabolism 3
ppo00630 Glyoxylate and dicarboxylate metabolism 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00910 Nitrogen metabolism 11
mtr00250 Alanine, aspartate and glutamate metabolism 4
mtr00220 Arginine biosynthesis 3
mtr01200 Carbon metabolism 3
mtr01230 Biosynthesis of amino acids 2
Gene list in the network
Symbol Function*
NIR1 nitrite reductase 1
GLU2 glutamate synthase 2
ACA4 autoinhibited Ca(2+)-ATPase
CA1 carbonic anhydrase 1
AT3G54830 Transmembrane amino acid transporter family protein
AT4G37550 Acetamidase/Formamidase family protein
AT4G37560 Acetamidase/Formamidase family protein
SHM1 serine transhydroxymethyltransferase 1
GLU1 glutamate synthase 1
PMDH2 peroxisomal NAD-malate dehydrogenase 2
CA2 carbonic anhydrase 2
GLN1;4 glutamine synthetase 1;4
AT5G26200 Mitochondrial substrate carrier family protein
GS2 glutamine synthetase 2
GSR 1 hypothetical protein
UPM1 urophorphyrin methylase 1
GLT1 NADH-dependent glutamate synthase 1
ASN2 asparagine synthetase 2
CRB chloroplast RNA binding protein
NRT2.5 nitrate transporter2.5
NIA2 nitrate reductase 2
MDAR6 monodehydroascorbate reductase 6
BCA4 beta carbonic anhydrase 4
AT1G70780 hypothetical protein
NIA1 nitrate reductase 1
Symbol Function*
GS1alpha cytosolic glutamine synthetase alpha
GDH2 glutamate dehydrogenase 2
GS glutamine synthetase nodule isozyme
LOC548016 ferredoxin-dependent glutamate synthase, chloroplastic
GS-2 glutamine synthetase precursor
GS glutamate--ammonia ligase
LOC548098 differentially expressed in soybean
NIR nitrate reductase
INR2 inducible nitrate reductase 2
LOC100306049 putative SAUR-like auxin-responsive protein
LOC100499831 senescence-associated protein
LOC100500448 carbonic anhydrase, chloroplastic
LOC100527136 putative integral membrane HPP family protein
LOC100775519 ferredoxin--nitrite reductase, chloroplastic
LOC100775540 plastidal glycolate/glycerate translocator 1, chloroplastic
LOC100777869 glutamate dehydrogenase 1
LOC100780873 glutamine synthetase leaf isozyme, chloroplastic
LOC100781868 carbonic anhydrase, chloroplastic
LOC100782859 beta carbonic anhydrase 5, chloroplastic
LOC100784900 glutamate synthase [NADH], amyloplastic
LOC100787888 high affinity nitrate transporter 2.5
LOC100788009 NADP-specific glutamate dehydrogenase
LOC100791763 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
LOC100793231 glutamate dehydrogenase 2
LOC100797935 alpha carbonic anhydrase 7
LOC100801991 glutamate dehydrogenase 1
LOC100803196 high affinity nitrate transporter 2.5
LOC100803945 carbonic anhydrase 2
LOC100807954 beta carbonic anhydrase 5, chloroplastic
LOC100809032 NADP-specific glutamate dehydrogenase
LOC100809299 ferredoxin-dependent glutamate synthase, chloroplastic-like
LOC100809905 glutamate synthase [NADH], amyloplastic
LOC100810127 uroporphyrinogen-III C-methyltransferase
LOC100810496 carbonic anhydrase
LOC100811331 beta carbonic anhydrase 5, chloroplastic
LOC100811978 alpha carbonic anhydrase 7
LOC100812124 carbonic anhydrase, chloroplastic-like
LOC100813471 putative nitrate reductase 1
LOC100815931 glutamate synthase [NADH], amyloplastic
LOC100817839 probable WRKY transcription factor 47
LOC100817922 glutamine synthetase PR-2
LOC100818103 nitrate reductase [NADH] 2
LOC100818642 nitrate reductase [NADH] 2
LOC100818830 adenylate kinase 5, chloroplastic
LOC100819340 alpha carbonic anhydrase 7
LOC100819513 glutamate synthase [NADH], amyloplastic
LOC112997713 S-type anion channel SLAH2-like
Symbol Function*
LeNRT2.3 nitrate transporter NRT2.3
GS2 glutamine synthetase
nii1 nitrite reductase
NR nitrate reductase
LOC101251152 high affinity nitrate transporter 2.4-like
LOC101258465 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic
LOC101259539 nodulin-related MtN21 family protein
Symbol Function*
LOC4326014 ferredoxin--nitrite reductase, chloroplastic-like
LOC4326583 carbonic anhydrase, chloroplastic
LOC4326671 uroporphyrinogen-III C-methyltransferase
LOC4327183 cytochrome P450 71A1
LOC4330076 bifunctional nitrilase/nitrile hydratase NIT4-like
LOC4330835 ferredoxin--nitrite reductase, chloroplastic-like
LOC4330852 soluble inorganic pyrophosphatase 6, chloroplastic
LOC4330867 nitrate reductase [NAD(P)H]
LOC4332108 glutamine synthetase cytosolic isozyme 1-2-like
LOC4333430 LOB domain-containing protein 38
LOC4333744 uncharacterized LOC4333744
LOC4334719 uncharacterized LOC4334719
LOC4335782 alpha carbonic anhydrase 1, chloroplastic
LOC4337051 aminomethyltransferase, mitochondrial
LOC4344164 ferredoxin-dependent glutamate synthase, chloroplastic-like
LOC4345604 alpha carbonic anhydrase 7
LOC4345795 nitrate reductase [NADH] 1-like
LOC4345798 nitrate reductase [NADH] 1-like
LOC4348870 cyanate hydratase-like
LOC107275911 protein DETOXIFICATION 42
Symbol Function*
LOC542092 nitrate transport 2
LOC542214 glutamine synthetase 4
LOC542215 glutamine synthetase 3
LOC542264 nitrite reductase2
LOC542278 nitrate reductase [NADH]-like
LOC542401 glutamine synthetase 5
LOC542520 glutamine synthetase 6
LOC542710 ferredoxin-dependent glutamate synthase 1
LOC542745 siroheme uroporphyrinogen methyltransferase 1
LOC542746 glutamine synthetase 1
LOC606442 putative high affinity nitrate transporter
LOC778437 high affinity nitrate transporter
LOC100192782 Integral membrane HPP family protein
LOC100193864 Alpha carbonic anhydrase 4
LOC100272439 carbonic anhydrase
LOC100272575 uncharacterized LOC100272575
LOC100272772 uncharacterized LOC100272772
LOC100274212 Allantoinase
LOC100274597 carbonic anhydrase
LOC100283312 carbonic anhydrase
LOC100285064 uncharacterized LOC100285064
LOC100382491 carbonic anhydrase6
LOC100383210 uncharacterized LOC100383210
LOC103626417 protein PHOSPHATE STARVATION RESPONSE 3
LOC103627596 expansin-B10-like
LOC103627781 ferredoxin--nitrite reductase, chloroplastic-like
LOC103636185 glutamate synthase 1 [NADH], chloroplastic
LOC103636218 high-affinity nitrate transporter 2.3
LOC103643134 nitrate reductase [NADH]-like
LOC103651348 glutamate synthase 1 [NADH], chloroplastic
LOC103651649 uncharacterized LOC103651649
LOC103653668 uncharacterized LOC103653668
LOC103654219 nitrate reductase [NAD(P)H]
LOC109944895 probable high-affinity nitrate transporter 2.4
Symbol Function*
LOC103829262 beta carbonic anhydrase 3
LOC103830551 nitrate reductase [NADH], clone PBNBR1412
LOC103832206 nitrate reductase [NADH], clone PBNBR1405
LOC103832828 NADP-specific glutamate dehydrogenase-like
LOC103833698 glutamine synthetase, chloroplastic-like
LOC103837425 uncharacterized LOC103837425
LOC103837684 polyol transporter 5
LOC103839002 glutamine synthetase cytosolic isozyme 1-3-like
LOC103844354 ferredoxin--nitrite reductase, chloroplastic
LOC103846320 glutamine synthetase cytosolic isozyme 1-4
LOC103846841 transcription factor TGA4
LOC103847058 glutamate dehydrogenase 2
LOC103848008 ferredoxin--nitrite reductase, chloroplastic
LOC103848073 nitrilase 2
LOC103850656 glutamate dehydrogenase 2-like
LOC103850948 beta carbonic anhydrase 2, chloroplastic
LOC103851053 glutamine synthetase cytosolic isozyme 1-4-like
NIT-T1 nitrilase 2-like
LOC103853097 nitrate reductase [NADH], clone PBNBR1412-like
LOC103854294 zerumbone synthase
LOC103858845 formamidase
LOC103858933 formamidase-like
LOC103859729 glutamine synthetase cytosolic isozyme 1-3-like
LOC103862714 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
LOC103869647 glutamine synthetase cytosolic isozyme 1-3-like
LOC103869648 glutamine synthetase cytosolic isozyme 1-3-like
LOC103870985 beta carbonic anhydrase 1, chloroplastic
LOC103871264 NADP-specific glutamate dehydrogenase
LOC103874711 uncharacterized LOC103874711
Symbol Function*
LOC100241221 molybdate transporter 2
LOC100250701 formamidase
LOC100253671 ferredoxin--nitrite reductase, chloroplastic-like
LOC100255878 formamidase
GDH glutamate dehydrogenase
LOC100258771 high-affinity nitrate transporter 3.1
LOC100260250 high affinity nitrate transporter 2.5
LOC100260399 uncharacterized LOC100260399
LOC100263048 glutamate dehydrogenase
LOC100264320 nitrate reductase [NADH]-like
LOC100852901 siroheme synthase
Symbol Function*
LOC7458925 ferredoxin-dependent glutamate synthase, chloroplastic
LOC7463180 nitrate reductase [NADH]
LOC7469108 glutamine synthetase leaf isozyme, chloroplastic
LOC7469126 nitrate reductase [NADH]
LOC7469881 glutamate dehydrogenase 1
LOC7474840 uncharacterized LOC7474840
LOC7482352 glutamate dehydrogenase 1
LOC7482798 glucose-6-phosphate 1-dehydrogenase, chloroplastic
Symbol Function*
LOC11406332 calcium uniporter protein 2, mitochondrial
LOC11414418 ferredoxin--NADP reductase, root isozyme, chloroplastic
LOC11414500 probable glutamate dehydrogenase 3
LOC11415881 inducible nitrate reductase [NADH] 2
LOC11417180 probable protein phosphatase 2C 72
LOC11418827 high affinity sulfate transporter 2
LOC11428809 nitrate reductase [NADH]
LOC11429951 zinc finger protein 1
LOC11439136 uncharacterized LOC11439136
LOC11440318 glucose-6-phosphate 1-dehydrogenase 2, chloroplastic
LOC11445727 ferredoxin--nitrite reductase, chloroplastic
LOC25482265 glutamate synthase [NADH], amyloplastic
LOC25483816 alpha carbonic anhydrase 1, chloroplastic
LOC25483818 alpha carbonic anhydrase 1, chloroplastic
LOC25486062 glutamine synthetase leaf isozyme, chloroplastic
LOC25492414 high-affinity nitrate transporter 2.1
LOC25492416 high-affinity nitrate transporter 2.1
LOC25493591 glutamate dehydrogenase 2
LOC25493699 high-affinity nitrate transporter 3.1
LOC112419205 uncharacterized LOC112419205


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