KEGG 00999 Biosynthesis of secondary metabolites - unclassified
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 12
ath00999 Biosynthesis of secondary metabolites - unclassified 5
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ath00941 Flavonoid biosynthesis 3
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 24
gma00999 Biosynthesis of secondary metabolites - unclassified 15
gma00941 Flavonoid biosynthesis 13
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 10
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 9
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 11
sly00999 Biosynthesis of secondary metabolites - unclassified 9
sly00941 Flavonoid biosynthesis 7
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 7
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 10
osa00999 Biosynthesis of secondary metabolites - unclassified 5
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
osa00360 Phenylalanine metabolism 4
osa00941 Flavonoid biosynthesis 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 8
zma00999 Biosynthesis of secondary metabolites - unclassified 6
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
zma00941 Flavonoid biosynthesis 4
zma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 14
bra00999 Biosynthesis of secondary metabolites - unclassified 7
bra00941 Flavonoid biosynthesis 6
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 9
vvi00941 Flavonoid biosynthesis 7
vvi00999 Biosynthesis of secondary metabolites - unclassified 7
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 3
ppo00941 Flavonoid biosynthesis 2
ppo00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
ppo00999 Biosynthesis of secondary metabolites - unclassified 2
Gene list in the network
Symbol Function*
C4H cinnamate-4-hydroxylase
PAL1 PHE ammonia lyase 1
CYP98A3 cytochrome P450, family 98, subfamily A, polypeptide 3
PAL4 phenylalanine ammonia-lyase 4
4CL5 4-coumarate:CoA ligase 5
4CL2 4-coumarate:CoA ligase 2
PAL2 phenylalanine ammonia-lyase 2
CCoAOMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
CAD5 cinnamyl alcohol dehydrogenase 5
OMT1 O-methyltransferase 1
4CL1 4-coumarate:CoA ligase 1
LysoPL2 lysophospholipase 2
MYB63 myb domain protein 63
Symbol Function*
4CL3 4-coumarate:CoA ligase isoenzyme 3
4CL4 4-coumarate--CoA ligase 4
4CL2 4-coumarate--CoA ligase 2
4CL1 4-coumarate:coenzyme A ligase
CHI2-A chalcone--flavonone isomerase 2-A
CHI4A chalcone isomerase 4A
CHS1 chalcone synthase 1
DFR2 dihydroflavonol-4-reductase
C4H trans-cinnamate 4-monooxygenase
LOC100779260 caffeoyl-CoA O-methyltransferase
LOC100780516 probable caffeoyl-CoA O-methyltransferase At4g26220
LOC100783579 NAD(P)-binding Rossmann-fold superfamily protein
LOC100785661 caffeoylshikimate esterase
PAL1.2 phenylalanine ammonia-lyase 1
LOC100789070 bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like
OMT5 anthocyanin 3'-O-methyltransferase
CCR cinnamoyl-CoA reductase
LOC100799303 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
LOC100800494 transcription factor MYB32-like
PAL2.4 phenylalanine ammonia-lyase 2.4
LOC100805517 respiratory burst oxidase homolog protein A
IMT1 myo-inositol-O-methyltransferase
LOC100806561 shikimate O-hydroxycinnamoyltransferase
LOC100810418 4-coumarate--CoA ligase 1
LOC100811247 caffeoyl-CoA O-methyltransferase
LOC100811418 4-coumarate--CoA ligase-like 1
LOC100812937 mediator of RNA polymerase II transcription subunit 33A
LOC100814237 4-coumarate--CoA ligase-like 1
PAL2.2 phenylalanine ammonia-lyase 2.2
LOC100818985 trans-cinnamate 4-monooxygenase
LOC100819192 4-coumarate--CoA ligase 1
LOC100819938 alcohol dehydrogenase-like 6
LOC100820075 shikimate O-hydroxycinnamoyltransferase
Symbol Function*
LOC101243656 phenylalanine ammonia-lyase 6
LOC101244196 trans-cinnamate 4-monooxygenase
LOC101244496 trans-cinnamate 4-monooxygenase
LOC101248210 4-coumarate--CoA ligase
4CL 4-coumarate--CoA ligase
PAL2 phenylalanine ammonia-lyase 2
LOC101253032 caffeoyl-CoA O-methyltransferase 5
LOC101260278 caffeoyl-CoA O-methyltransferase 6
LOC101265187 caffeoyl-CoA O-methyltransferase-like
LOC101265690 caffeoyl-CoA O-methyltransferase
LOC101265977 caffeoyl-CoA O-methyltransferase
Symbol Function*
LOC4326996 S-adenosylmethionine synthase 2-like
LOC4328485 probable 4-coumarate--CoA ligase 3
LOC4328552 cinnamyl alcohol dehydrogenase 2-like
LOC4329329 cytochrome P450 CYP73A100
LOC4330036 phenylalanine ammonia-lyase
LOC4330037 phenylalanine ammonia-lyase
LOC4330040 phenylalanine ammonia-lyase-like
LOC4338409 trans-cinnamate 4-monooxygenase
LOC4338861 phenylalanine ammonia-lyase
LOC4340240 caffeoyl-CoA O-methyltransferase 1
LOC4345717 probable 4-coumarate--CoA ligase 5
LOC4345934 tricin synthase 1-like
Symbol Function*
LOC542166 4-coumarate--CoA ligase 1
LOC100125646 catechol-O-methyltransferase
LOC100272756 putative cytochrome P450 superfamily protein
LOC100272801 putative cytochrome P450 superfamily protein
LOC100273579 phenylalanine ammonia lyase9
LOC100273683 uncharacterized LOC100273683
LOC103643375 cytochrome P450 84A1
LOC103653401 AMP-binding superfamily pseudogene
LOC107282093 Caffeoyl-CoA O-methyltransferase1
Symbol Function*
LOC103829920 phenylalanine ammonia-lyase 2-like
LOC103834443 caffeoyl-CoA O-methyltransferase 1
LOC103857055 flavone 3'-O-methyltransferase 1
LOC103857323 trans-cinnamate 4-monooxygenase-like
LOC103857642 S-adenosylmethionine synthase 3
LOC103857960 cytochrome P450 98A3
LOC103859897 4-coumarate--CoA ligase 4
LOC103862317 caffeoyl-CoA O-methyltransferase 1
LOC103862330 cinnamyl alcohol dehydrogenase 5
LOC103865043 trans-cinnamate 4-monooxygenase-like
LOC103865564 S-adenosylmethionine synthase 3-like
LOC103865574 phenylalanine ammonia-lyase 1
LOC103867229 phenylalanine ammonia-lyase 1
LOC103867954 trans-cinnamate 4-monooxygenase
LOC103868556 4-coumarate--CoA ligase 1
LOC103869052 phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic
LOC103871191 caffeoylshikimate esterase
Symbol Function*
LOC100233087 caffeoyl-CoA O-methyltransferase
LOC100241377 phenylalanine ammonia-lyase
LOC100242903 stilbene synthase 4
LOC100243978 caffeoyl-CoA O-methyltransferase
4CL 4-coumarate:CoA ligase
LOC100251539 cytochrome P450 CYP73A100
LOC100253493 trans-cinnamate 4-monooxygenase-like
LOC100254698 4-coumarate--CoA ligase 2
LOC100256341 uncharacterized LOC100256341
LOC100263633 cytochrome P450 98A2
LOC100264240 probable carboxylesterase 2
LOC100266547 4-coumarate--CoA ligase-like 9
LOC100267022 arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like
LOC100267215 cytochrome P450 CYP73A100
Symbol Function*
LOC7457542 caffeoyl-CoA O-methyltransferase 1
LOC7492044 caffeoyl-CoA O-methyltransferase 2
LOC7493466 caffeic acid 3-O-methyltransferase 1


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