KEGG 03410 Base excision repair
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 18
ath03030 DNA replication 11
ath03420 Nucleotide excision repair 8
ath03430 Mismatch repair 5
ath03440 Homologous recombination 4
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 37
gma03030 DNA replication 18
gma03420 Nucleotide excision repair 15
gma03430 Mismatch repair 11
gma03440 Homologous recombination 9
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 11
sly03030 DNA replication 8
sly03420 Nucleotide excision repair 6
sly03430 Mismatch repair 4
sly03440 Homologous recombination 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03410 Base excision repair 13
osa03440 Homologous recombination 5
osa03030 DNA replication 5
osa03420 Nucleotide excision repair 4
osa03430 Mismatch repair 2
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 17
zma03030 DNA replication 7
zma03420 Nucleotide excision repair 6
zma03430 Mismatch repair 3
zma03440 Homologous recombination 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03410 Base excision repair 11
bra03030 DNA replication 8
bra03420 Nucleotide excision repair 8
bra03430 Mismatch repair 7
bra03440 Homologous recombination 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03410 Base excision repair 13
vvi03030 DNA replication 7
vvi03420 Nucleotide excision repair 6
vvi03430 Mismatch repair 5
vvi03440 Homologous recombination 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 14
ppo03030 DNA replication 9
ppo03420 Nucleotide excision repair 7
ppo03430 Mismatch repair 6
ppo03440 Homologous recombination 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 22
mtr03030 DNA replication 11
mtr03420 Nucleotide excision repair 8
mtr03430 Mismatch repair 5
mtr03440 Homologous recombination 5
Gene list in the network
Symbol Function*
ORC4 origin recognition complex subunit 4
PCNA2 proliferating cell nuclear antigen 2
PARP1 poly(ADP-ribose) polymerase 2
ATNTH1 DNA glycosylase superfamily protein
ARP apurinic endonuclease-redox protein
POLGAMMA1 polymerase gamma 1
AT3G21480 BRCT domain-containing DNA repair protein
emb1703 embryo defective 1703
PARP2 poly(ADP-ribose) polymerase
PRL Minichromosome maintenance (MCM2/3/5) family protein
AT5G22820 ARM repeat superfamily protein
AT5G26680 5'-3' exonuclease family protein
POLA3 DNA primase POLA3
HAG2 histone acetyltransferase of the GNAT family 2
MIM P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT5G63960 DNA polymerase delta subunit 1
NTH2 endonuclease III 2
PCNA1 proliferating cellular nuclear antigen 1
LIG1 DNA ligase 1
TIL1 DNA polymerase epsilon catalytic subunit
Pol{lambda} DNA polymerase lambda (POLL)
AT1G15970 DNA glycosylase superfamily protein
AT1G27700 Syntaxin/t-SNARE family protein
POLGAMMA2 polymerase gamma 2
MMH-1 MUTM homolog-1
AT1G77310 wound-responsive family protein
POLD3 DNA-directed DNA polymerase
AT1G80850 DNA glycosylase superfamily protein
Symbol Function*
PARP3 seed maturation protein PM38
LOC548079 proliferating cell nuclear antigen
POLD1 DNA polymerase delta
LOC100305961 uncharacterized LOC100305961
LOC100306457 methyladenine glycosylase domain-containing protein
LOC100499704 putative high mobility group protein B1 protein
LOC100499936 uncharacterized LOC100499936
LOC100775329 transcription factor bHLH146
LOC100776653 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
LOC100778329 DNA polymerase delta subunit 4
LOC100779598 protein trichome birefringence-like 39
LOC100780072 DNA polymerase delta small subunit
LOC100780160 DNA-repair protein XRCC1
LOC100781364 replication factor C subunit 2
LOC100781861 protein NRT1/ PTR FAMILY 4.6
LOC100782126 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC100783023 importin beta-like SAD2 homolog
LOC100783155 DNA ligase 1
LOC100783263 probable GMP synthase [glutamine-hydrolyzing]
LOC100784116 DNA polymerase epsilon subunit B
LOC100784411 chromatin assembly factor 1 subunit FAS2-like
LOC100785041 chromosome transmission fidelity protein 18 homolog
LOC100785912 probable GMP synthase [glutamine-hydrolyzing]
LOC100788978 poly [ADP-ribose] polymerase 3
LOC100790659 probable pectate lyase 8
LOC100791643 fasciclin-like arabinogalactan protein 12
LOC100791725 probable GMP synthase [glutamine-hydrolyzing]
LOC100792878 flap endonuclease 1-like
LOC100793449 uncharacterized LOC100793449
LOC100793991 uncharacterized LOC100793991
LOC100795461 cell division control protein 45 homolog
LOC100797016 DNA polymerase I A, chloroplastic/mitochondrial
LOC100799441 DNA replication licensing factor MCM2
LOC100799459 DNA polymerase delta subunit 4
LOC100801163 DNA-3-methyladenine glycosylase 1
LOC100804739 DNA-damage-repair/toleration protein DRT100-like
LOC100805836 probable GMP synthase [glutamine-hydrolyzing]
LOC100805951 DNA polymerase delta small subunit
LOC100807239 DNA polymerase I A, chloroplastic/mitochondrial
LOC100808044 flap endonuclease 1-like
LOC100810677 DNA-3-methyladenine glycosylase
LOC100811352 probable GMP synthase [glutamine-hydrolyzing]
LOC100812003 DNA polymerase epsilon catalytic subunit A
LOC100812372 DNA polymerase delta subunit 3
LOC100814780 uncharacterized LOC100814780
LOC100817116 DNA-3-methyladenine glycosylase 1
LOC100817379 DNA polymerase delta catalytic subunit
LOC100817651 proliferating cell nuclear antigen
LOC100818039 uracil-DNA glycosylase, mitochondrial
LOC100818241 uracil-DNA glycosylase, mitochondrial
LOC100818448 uncharacterized LOC100818448
LOC100820078 DEAD-box ATP-dependent RNA helicase FANCM
Symbol Function*
MET1 DNA (cytosine-5)-methyltransferase 1
pcna proliferating cell nuclear antigen
LOC101251710 poly [ADP-ribose] polymerase 2-like
LOC101253967 DNA polymerase epsilon catalytic subunit A-like
LOC101254462 DNA polymerase epsilon subunit B
LOC101256637 DNA polymerase delta catalytic subunit
LOC101258653 homologous-pairing protein 2 homolog
LOC101258844 formamidopyrimidine-DNA glycosylase
LOC101258997 muscle M-line assembly protein unc-89
LOC101261194 uncharacterized LOC101261194
LOC101262147 adenine DNA glycosylase
LOC101262281 DNA ligase 1
LOC101264323 DNA polymerase lambda
LOC101266239 uncharacterized LOC101266239
LOC101268250 DNA replication licensing factor MCM3 homolog 2
LOC101268807 flap endonuclease 1
Symbol Function*
LOC4325041 DNA repair protein recA homolog 3, mitochondrial
LOC4325354 DDT domain-containing protein DDR4
LOC4327080 protein IWS1 homolog A
LOC4327960 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
LOC4337150 DNA polymerase I A, chloroplastic-like
LOC4339464 flap endonuclease 1-A-like
LOC4339907 uncharacterized LOC4339907
LOC4340098 DNA-repair protein XRCC1
LOC4340604 DNA polymerase lambda-like
LOC4340610 putative DNA glycosylase At3g47830
LOC4341109 uncharacterized LOC4341109
LOC4341640 formamidopyrimidine-DNA glycosylase
LOC4343013 poly [ADP-ribose] polymerase 1-like
LOC4344464 chromatin assembly factor 1 subunit FAS2 homolog
LOC4344789 DNA polymerase I A, chloroplastic-like
LOC4347081 probable GMP synthase [glutamine-hydrolyzing]
LOC4347814 protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3
LOC4349968 DNA polymerase delta catalytic subunit-like
LOC9272626 DNA-3-methyladenine glycosylase
Symbol Function*
LOC542357 proliferating cell nuclear antigen 2
LOC542425 proliferating cell nuclear antigen 1
LOC100191724 DNA glycosylase superfamily protein
LOC100192494 RNA polymerase II transcription factor B subunit 4
LOC100194009 uncharacterized LOC100194009
LOC100194229 DNA glycosylase superfamily protein
LOC100216672 DNA glycosylase superfamily protein
LOC100273513 uncharacterized LOC100273513
LOC100273912 N-glycosylase/DNA lyase OGG1
LOC100274123 DNA glycosylase superfamily protein
LOC100282786 F-box domain containing protein
LOC100284031 DNA-3-methyladenine glycosylase I
LOC100284178 serine/threonine-protein phosphatase 2A activator 2
LOC100284406 uracil-DNA glycosylase
LOC100285587 DNA-3-methyladenine glycosylase 1
LOC100286028 uncharacterized LOC100286028
LOC100383197 uncharacterized LOC100383197
LOC100383660 Flap endonuclease 1
LOC103627197 DNA polymerase epsilon catalytic subunit A
LOC103635146 poly [ADP-ribose] polymerase 2-like
LOC103641024 uncharacterized LOC103641024
LOC103641202 DNA polymerase I A, chloroplastic
LOC103641812 DNA glycosylase superfamily protein
LOC103643687 Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein
LOC103647201 poly (ADP-ribose) polymerase 1
LOC103650874 structural maintenance of chromosomes protein 2-1
LOC103653563 DNA repair protein RAD50
LOC103654581 DNA polymerase delta catalytic subunit
Symbol Function*
LOC103829668 DNA polymerase epsilon subunit 3
LOC103832343 DNA polymerase delta subunit 3
LOC103833588 non-structural maintenance of chromosomes element 3 homolog
LOC103838295 replication factor C subunit 2
LOC103843463 proliferating cell nuclear antigen
LOC103848479 uncharacterized LOC103848479
LOC103858405 protein MCM10 homolog
LOC103859438 retinoblastoma-related protein 1-like
LOC103863224 histone H2A variant 1
LOC103867904 CDT1-like protein a, chloroplastic
LOC103868024 proliferating cellular nuclear antigen 1
LOC103868500 formamidopyrimidine-DNA glycosylase
LOC103870233 DNA-3-methyladenine glycosylase 1
LOC103870439 protein SAD1/UNC-84 domain protein 2
LOC103871561 DNA ligase 1
LOC103871760 uncharacterized LOC103871760
LOC103872750 DNA-3-methyladenine glycosylase 1
LOC103873814 DNA polymerase delta catalytic subunit
Symbol Function*
LOC100241029 protein argonaute 4
LOC100241432 DNA polymerase epsilon catalytic subunit A
LOC100241865 DNA polymerase delta small subunit
LOC100244238 probable DNA primase large subunit
LOC100246082 high mobility group-like
LOC100246530 DNA polymerase delta catalytic subunit
LOC100248466 proliferating cell nuclear antigen-like
LOC100249983 structural maintenance of chromosomes protein 5
LOC100250468 DNA polymerase delta subunit 3
LOC100253025 uracil-DNA glycosylase, mitochondrial
LOC100256907 DNA ligase 1
LOC100257338 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
LOC100257544 high mobility group B2 protein-like
LOC100259948 separase
LOC100261209 formamidopyrimidine-DNA glycosylase
LOC100261796 poly [ADP-ribose] polymerase 1
LOC100265491 adenine DNA glycosylase
LOC100265910 chaperone protein dnaJ 6
Symbol Function*
LOC7454020 DNA polymerase epsilon subunit B
LOC7459070 TIMELESS-interacting protein
LOC7462135 uncharacterized LOC7462135
LOC7463320 DNA ligase 1
LOC7465959 probable GMP synthase [glutamine-hydrolyzing]
LOC7466858 DNA polymerase delta catalytic subunit
LOC7471982 poly [ADP-ribose] polymerase 1
LOC7472571 DNA replication licensing factor MCM3
LOC7474873 putative DNA glycosylase At3g47830
LOC7478518 protein GAST1
LOC7478554 proliferating cell nuclear antigen
LOC7479528 DNA polymerase delta small subunit
LOC7479625 protein argonaute 4A
LOC7481501 proliferating cell nuclear antigen
LOC7481612 probable GMP synthase [glutamine-hydrolyzing]
LOC7483643 65-kDa microtubule-associated protein 1
LOC7483976 DNA polymerase delta small subunit
LOC7484578 protein LONGIFOLIA 1
LOC7491255 DNA replication licensing factor MCM7
LOC7491462 uncharacterized LOC7491462
LOC7493396 probable GMP synthase [glutamine-hydrolyzing]
Symbol Function*
LOC11405585 putative DNA glycosylase At3g47830
LOC11407456 nucleolar protein 56
LOC11408397 DNA polymerase delta subunit 3
LOC11412823 flap endonuclease 1
LOC11415682 protein NRT1/ PTR FAMILY 4.5
LOC11417123 chitinase-like protein 2
LOC11418046 DNA polymerase lambda
LOC11425230 DNA-3-methyladenine glycosylase
LOC11431896 uncharacterized LOC11431896
LOC11433926 probable GMP synthase [glutamine-hydrolyzing]
LOC11437014 DNA polymerase delta small subunit
LOC11439558 probable GMP synthase [glutamine-hydrolyzing]
LOC11440570 DNA replication licensing factor MCM4
LOC11442049 DNA-repair protein XRCC1
LOC11444264 DNA polymerase I A, chloroplastic/mitochondrial
LOC11444798 DNA polymerase I A, chloroplastic/mitochondrial
LOC11445011 uncharacterized LOC11445011
LOC11445193 DNA polymerase epsilon catalytic subunit A
LOC25479532 DNA-3-methyladenine glycosylase 1
LOC25479885 methyl-CpG-binding domain protein 4-like protein
LOC25479887 methyl-CpG-binding domain protein 4-like protein
LOC25488453 glycerophosphodiester phosphodiesterase GDPD4
LOC25489857 DNA polymerase delta catalytic subunit
LOC25490757 proliferating cell nuclear antigen
LOC25492370 DNA ligase 1
LOC25492833 uracil-DNA glycosylase, mitochondrial
LOC25498091 DNA polymerase lambda
LOC25499650 zinc finger matrin-type protein 2
LOC25501880 DNA replication licensing factor MCM6
LOC25502437 probable GMP synthase [glutamine-hydrolyzing]
LOC112416512 uncharacterized LOC112416512


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