KEGG 03420 Nucleotide excision repair
[list]

Species ath(Arabidopsis) gma(Soybean) sly(Tomato) osa(Rice) zma(Maize) bra(Field mustard) vvi(Grape) ppo(Poplar) mtr(Medicago)
UMAP
Representative coexpressed gene network LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 27
ath03030 DNA replication 25
ath03430 Mismatch repair 18
ath03440 Homologous recombination 14
ath03410 Base excision repair 12
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 63
gma03030 DNA replication 41
gma03430 Mismatch repair 34
gma03440 Homologous recombination 24
gma03410 Base excision repair 16
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 22
sly03030 DNA replication 17
sly03430 Mismatch repair 12
sly03440 Homologous recombination 9
sly03410 Base excision repair 7
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 20
osa03030 DNA replication 17
osa03430 Mismatch repair 14
osa03440 Homologous recombination 9
osa03410 Base excision repair 6
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 37
zma03030 DNA replication 23
zma03430 Mismatch repair 18
zma03440 Homologous recombination 11
zma03410 Base excision repair 9
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 30
bra03030 DNA replication 21
bra03430 Mismatch repair 16
bra03440 Homologous recombination 11
bra03410 Base excision repair 10
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 27
vvi03030 DNA replication 24
vvi03430 Mismatch repair 17
vvi03440 Homologous recombination 10
vvi03410 Base excision repair 7
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 14
ppo03030 DNA replication 12
ppo03430 Mismatch repair 9
ppo03410 Base excision repair 7
ppo03440 Homologous recombination 3
LCNkegg
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 17
mtr03420 Nucleotide excision repair 17
mtr03430 Mismatch repair 11
mtr03410 Base excision repair 10
mtr03440 Homologous recombination 8
Gene list in the network
Symbol Function*
ORC4 origin recognition complex subunit 4
RPA2 replicon protein A2
PCNA2 proliferating cell nuclear antigen 2
PARP1 poly(ADP-ribose) polymerase 2
ORC2 origin recognition complex second largest subunit 2
POLD2 DNA polymerase delta small subunit
AT3G14740 RING/FYVE/PHD zinc finger superfamily protein
HPY2 RING/U-box superfamily protein
RPA32B Replication protein A, subunit RPA32
POLGAMMA1 polymerase gamma 1
AT3G21480 BRCT domain-containing DNA repair protein
DEL1 DP-E2F-like 1
AT3G52630 Nucleic acid-binding, OB-fold-like protein
AT3G54750 downstream neighbor of Son
AT3G56870 hypothetical protein
emb1703 embryo defective 1703
DDB1A damaged DNA binding protein 1A
AT4G19130 Replication factor-A protein 1-like protein
BRCA1 breast cancer susceptibility1
PRL Minichromosome maintenance (MCM2/3/5) family protein
AT4G23860 PHD finger protein-like protein
AT4G28310 microtubule-associated protein
CTF7 protein CTF7
RPA70B RPA70-kDa subunit B
ABAP1 ARMADILLO BTB protein 1
RBX1 RING-box 1
RFC1 replication factor C1
DPB2 DNA polymerase epsilon subunit B2
HMGB6 high-mobility group box 6
AT5G26680 5'-3' exonuclease family protein
EMB2775 ATPase family associated with various cellular activities (AAA)
RAD23D Rad23 UV excision repair protein family
AT5G38690 Zinc-finger domain of monoamine-oxidase A repressor R1 protein
POLA3 DNA primase POLA3
CYCA3;1 Cyclin A3;1
RPA70C Replication factor-A protein 1-like protein
CUL4 cullin4
UBP21 ubiquitin-specific protease 21
AT5G47690 binding protein
HAG2 histone acetyltransferase of the GNAT family 2
RPA70D Replication factor-A protein 1-like protein
MIM P-loop containing nucleoside triphosphate hydrolases superfamily protein
AT5G63960 DNA polymerase delta subunit 1
PCNA1 proliferating cellular nuclear antigen 1
LIG1 DNA ligase 1
TIL1 DNA polymerase epsilon catalytic subunit
CDKD1;3 cyclin-dependent kinase D1;3
EMB1968 ATPase family associated with various cellular activities (AAA)
ORC6 origin recognition complex protein 6
BARD1 breast cancer associated RING 1
POLGAMMA2 polymerase gamma 2
RFC2 replication factor C 2
SKP1 S phase kinase-associated protein 1
RFC3 replication factor C subunit 3
POLD3 DNA-directed DNA polymerase
Symbol Function*
LOC548020 ribonucleoside-diphosphate reductase large subunit
LOC548079 proliferating cell nuclear antigen
POLD1 DNA polymerase delta
LOC100305527 uncharacterized LOC100305527
LOC100306197 uncharacterized LOC100306197
LOC100306370 putative calcium-binding protein
LOC100306382 uncharacterized LOC100306382
LOC100306396 calcium-binding protein PBP1-like protein
LOC100499843 uncharacterized LOC100499843
LOC100499859 uncharacterized LOC100499859
LOC100499877 uncharacterized LOC100499877
LOC100499936 uncharacterized LOC100499936
LOC100499987 uncharacterized LOC100499987
LOC100500045 uncharacterized LOC100500045
LOC100500151 uncharacterized LOC100500151
LOC100500203 putative small nuclear ribonucleoprotein Sm D2
LOC100500350 uncharacterized LOC100500350
LOC100500465 calcium-binding EF-hand family protein
LOC100526985 uncharacterized LOC100526985
LOC100527035 uncharacterized LOC100527035
LOC100527914 protein DAMAGED DNA-BINDING 2
LOC100775872 calcium-binding protein KRP1
LOC100775926 replication factor C subunit 2
LOC100776016 general transcription and DNA repair factor IIH subunit TFB1-1
LOC100776751 general transcription factor IIH subunit 3-like
LOC100776753 uncharacterized protein At4g28440
LOC100777091 replication protein A 70 kDa DNA-binding subunit B
LOC100777539 origin recognition complex subunit 6-like
LOC100777541 uncharacterized LOC100777541
LOC100778187 ubiquitin receptor RAD23b
LOC100778194 uncharacterized LOC100778194
LOC100778329 DNA polymerase delta subunit 4
LOC100779452 uncharacterized LOC100779452
LOC100780072 DNA polymerase delta small subunit
LOC100781364 replication factor C subunit 2
LOC100781484 replication protein A 14 kDa subunit B
LOC100782126 deoxyuridine 5'-triphosphate nucleotidohydrolase
LOC100782586 DNA replication licensing factor MCM4
LOC100782652 replication factor C subunit 3
LOC100782819 replication protein A 32 kDa subunit B
LOC100782900 protein MRG1
LOC100783023 importin beta-like SAD2 homolog
LOC100783124 ARM REPEAT PROTEIN INTERACTING WITH ABF2
LOC100783155 DNA ligase 1
LOC100784116 DNA polymerase epsilon subunit B
LOC100784411 chromatin assembly factor 1 subunit FAS2-like
LOC100785030 cyclin-D3-2
LOC100785041 chromosome transmission fidelity protein 18 homolog
LOC100786023 WD-40 repeat-containing protein MSI4
LOC100788117 uncharacterized protein At4g28440
LOC100788329 replication factor C subunit 2
LOC100789550 general transcription and DNA repair factor IIH helicase subunit XPB1-like
LOC100789570 RING-box protein 1a
LOC100789744 uncharacterized LOC100789744
LOC100789756 replication protein A 32 kDa subunit A
LOC100790070 replication factor C subunit 1
LOC100790433 WD repeat-containing protein ATCSA-1
LOC100793506 protein DAMAGED DNA-BINDING 2
LOC100793962 uncharacterized LOC100793962
LOC100795461 cell division control protein 45 homolog
LOC100797016 DNA polymerase I A, chloroplastic/mitochondrial
LOC100797609 DNA replication complex GINS protein PSF3
LOC100798331 replication factor C subunit 2
LOC100799441 DNA replication licensing factor MCM2
LOC100799459 DNA polymerase delta subunit 4
LOC100801450 60S ribosomal protein L39
LOC100801586 calcium-binding protein KIC-like
LOC100801694 histone chaperone ASF1B
LOC100802512 replication protein A 32 kDa subunit A
LOC100802677 calcium-binding protein KIC
LOC100802809 replication factor C subunit 1
LOC100803022 SUMO-conjugating enzyme SCE1
LOC100803989 DNA ligase 1
LOC100805951 DNA polymerase delta small subunit
LOC100807239 DNA polymerase I A, chloroplastic/mitochondrial
LOC100808364 replication protein A 70 kDa DNA-binding subunit B
LOC100809066 putative DNA repair protein RAD23-3-like
LOC100810574 general transcription and DNA repair factor IIH subunit TFB4
LOC100811780 general transcription and DNA repair factor IIH subunit TFB1-1
LOC100812003 DNA polymerase epsilon catalytic subunit A
LOC100812372 DNA polymerase delta subunit 3
LOC100813881 ubiquitin receptor RAD23c-like
LOC100814162 ubiquitin receptor RAD23c
LOC100815581 WD repeat-containing protein ATCSA-1
LOC100816916 structural maintenance of chromosomes protein 6B
LOC100817379 DNA polymerase delta catalytic subunit
LOC100817651 proliferating cell nuclear antigen
LOC100818012 ubiquitin receptor RAD23c
LOC100818329 replication factor C subunit 3-like
LOC100818437 thymidine kinase a
LOC100818501 general transcription and DNA repair factor IIH helicase subunit XPB1
LOC100819019 putative DNA repair protein RAD23-1-like
LOC100820078 DEAD-box ATP-dependent RNA helicase FANCM
LOC100820622 ribonucleoside-diphosphate reductase small chain
Symbol Function*
DDTFR10A ripening regulated protein DDTFR10/A
MET1 DNA (cytosine-5)-methyltransferase 1
pcna proliferating cell nuclear antigen
LOC101243636 DNA replication licensing factor MCM7-like protein
RPA32a replication protein A
LOC101246300 chromatin assembly factor 1 subunit FAS2
LOC101246538 PAC4 domain-containing protein
LOC101246966 cyclin-H1-1
LOC101248520 calcium-binding protein PBP1
LOC101249295 uncharacterized RING finger protein C548.05c
ERF36 ethylene response factor F.1
LOC101249890 RING-box protein 1a
LOC101251472 uncharacterized protein At4g28440
LOC101251771 serine/arginine-rich splicing factor SC35
LOC101251823 calcium-binding protein KRP1
LOC101253967 DNA polymerase epsilon catalytic subunit A-like
LOC101254462 DNA polymerase epsilon subunit B
LOC101255630 uncharacterized LOC101255630
LOC101255747 replication protein A 14 kDa subunit B-like
LOC101255870 replication protein A 70 kDa DNA-binding subunit B
LOC101256637 DNA polymerase delta catalytic subunit
LOC101258124 ubiquitin receptor RAD23c
LOC101258997 muscle M-line assembly protein unc-89
LOC101259644 RING-box protein 1
LOC101259776 DDT domain-containing protein DDR4
LOC101260102 uncharacterized protein At4g28440
LOC101261194 uncharacterized LOC101261194
LOC101262281 DNA ligase 1
LOC101264016 DNA-directed RNA polymerase II subunit 4
LOC101264020 replication factor C subunit 3
LOC101264867 DNA replication licensing factor MCM4
LOC101265536 CDK-activating kinase assembly factor-related
LOC101265575 protein DAMAGED DNA-BINDING 2
LOC101266120 uncharacterized protein At4g28440-like
LOC101266239 uncharacterized LOC101266239
LOC101268250 DNA replication licensing factor MCM3 homolog 2
Symbol Function*
LOC4325354 DDT domain-containing protein DDR4
LOC4326359 uncharacterized protein At4g28440
LOC4327080 protein IWS1 homolog A
LOC4327706 replication protein A 14 kDa subunit-like
LOC4328500 ubiquitin receptor RAD23b
LOC4329118 WD repeat-containing protein ATCSA-1
LOC4329138 uncharacterized LOC4329138
LOC4330068 replication protein A 32 kDa subunit B-like
LOC4330895 replication factor C subunit 3-like
LOC4331016 DNA replication licensing factor MCM5-like
LOC4331236 replication protein A 32 kDa subunit A-like
LOC4332052 replication protein A 70 kDa DNA-binding subunit B-like
LOC4334389 replication factor C subunit 5-like
LOC4337640 sister chromatid cohesion protein DCC1
LOC4337886 DNA polymerase epsilon subunit B
LOC4338052 general transcription and DNA repair factor IIH subunit TFB5
LOC4340268 uncharacterized LOC4340268
LOC4342292 protein HGV2
LOC4342803 uncharacterized LOC4342803
LOC4344013 anaphase-promoting complex subunit 13
LOC4344464 chromatin assembly factor 1 subunit FAS2 homolog
LOC4346812 probable histone acetyltransferase type B catalytic subunit
LOC4347604 uncharacterized LOC4347604
LOC4347721 SKP1-like protein 1
LOC4347894 DNA polymerase epsilon subunit 3
LOC4348965 DNA ligase 1
LOC4349968 DNA polymerase delta catalytic subunit-like
LOC4350754 replication factor C subunit 1-like
LOC4351654 replication factor C subunit 2-like
LOC9269106 uncharacterized LOC9269106
LOC9270179 histone H3.v1
LOC9272726 uncharacterized LOC9272726
Symbol Function*
LOC541878 diphosphonucleotide phosphatase 2
LOC542357 proliferating cell nuclear antigen 2
LOC542425 proliferating cell nuclear antigen 1
LOC542504 replication licensing factor MCM7 homologue
LOC542738 replication origin activator 2
LOC100191313 uncharacterized LOC100191313
LOC100191435 Pseudouridine synthase family protein
LOC100192012 uncharacterized LOC100192012
LOC100192494 RNA polymerase II transcription factor B subunit 4
LOC100192883 RAD1 DNA repair protein homolog
LOC100192928 uncharacterized LOC100192928
LOC100193949 uncharacterized LOC100193949
LOC100194009 uncharacterized LOC100194009
LOC100194011 DNA-directed DNA polymerases
LOC100216703 replication factor C subunit 3
LOC100216911 uncharacterized LOC100216911
LOC100272286 uncharacterized LOC100272286
LOC100272776 uncharacterized LOC100272776
LOC100273584 Replication protein A DNA-binding subunit
LOC100273774 Isoleucine--tRNA ligase cytoplasmic
LOC100274222 DNA repair protein RAD23
LOC100275065 uncharacterized LOC100275065
LOC100280053 cyclin superfamily protein, putative
LOC100280690 DNA polymerase epsilon subunit 2
LOC100280726 uncharacterized LOC100280726
LOC100282197 replication factor C subunit 2
LOC100282762 uncharacterized LOC100282762
LOC100283179 uncharacterized LOC100283179
LOC100283190 OB-fold nucleic acid binding domain containing protein
LOC100283481 uncharacterized LOC100283481
LOC100283483 uncharacterized LOC100283483
LOC100283737 OB-fold nucleic acid binding domain containing protein
LOC100284400 chaperone protein dnaJ 6
LOC100284406 uracil-DNA glycosylase
LOC100285013 OB-fold nucleic acid binding domain containing protein
LOC100285903 OB-fold nucleic acid binding domain containing protein
LOC100285960 DNA repair helicase UVH6
LOC100382167 DNA polymerase delta small subunit
LOC100383012 putative arginine-tRNA protein transferase family protein
LOC100383890 uncharacterized LOC100383890
LOC100501431 uncharacterized LOC100501431
LOC103625817 replication factor C subunit 5
LOC103625822 cullin-4
LOC103627197 DNA polymerase epsilon catalytic subunit A
LOC103632168 DNA repair protein UVH3
LOC103634739 RING-box protein 1-like
LOC103635427 uncharacterized LOC103635427
LOC103637892 STOREKEEPER protein
LOC103648088 replication factor C subunit 1
LOC103649912 RING-box protein 1a
LOC103650874 structural maintenance of chromosomes protein 2-1
LOC103654581 DNA polymerase delta catalytic subunit
Symbol Function*
MIR1885A microRNA MIR1885a
LOC103827747 cullin-4-like
LOC103827897 putative UDP-arabinose 4-epimerase 4
LOC103829668 DNA polymerase epsilon subunit 3
LOC103831972 RNA polymerase II subunit 5-mediating protein homolog
LOC103832343 DNA polymerase delta subunit 3
LOC103834207 DNA damage-binding protein 1b
LOC103834767 uncharacterized LOC103834767
LOC103835735 replication factor C subunit 4-like
LOC103837365 replication protein A 70 kDa DNA-binding subunit D
LOC103838295 replication factor C subunit 2
LOC103839745 DNA damage-binding protein 1a
LOC103839866 origin of replication complex subunit 1B
LOC103841802 sister chromatid cohesion 1 protein 3
LOC103842858 probable ubiquitin receptor RAD23a
LOC103843463 proliferating cell nuclear antigen
LOC103843883 replication protein A 32 kDa subunit B
LOC103846518 translocon-associated protein subunit beta-like
LOC103848026 AT-rich interactive domain-containing protein 4
LOC103851417 replication factor C subunit 1
LOC103852231 leucine-rich repeat receptor-like protein CLAVATA2
LOC103853691 cullin-4
LOC103854266 fidgetin-like protein 1
LOC103854301 RING finger protein 10
LOC103854624 pre-mRNA-splicing factor SYF1
LOC103854671 replication factor C subunit 3-like
LOC103855218 DNA topoisomerase 3-alpha
LOC103855752 replication protein A 70 kDa DNA-binding subunit B
LOC103858225 calcium-binding protein KIC-like
LOC103858328 DNA polymerase epsilon subunit B
LOC103858405 protein MCM10 homolog
LOC103859438 retinoblastoma-related protein 1-like
LOC103860462 DNA replication licensing factor MCM4
LOC103860562 replication protein A 70 kDa DNA-binding subunit D
LOC103863224 histone H2A variant 1
LOC103864250 protein XAP5 CIRCADIAN TIMEKEEPER-like
LOC103864559 replication protein A 32 kDa subunit A
LOC103866288 calcium-binding protein KIC-like
LOC103867904 CDT1-like protein a, chloroplastic
LOC103868024 proliferating cellular nuclear antigen 1
LOC103868069 ATP-dependent DNA helicase Q-like 4A
LOC103868085 uncharacterized protein At4g28440-like
LOC103868500 formamidopyrimidine-DNA glycosylase
LOC103869531 protein TONSOKU
LOC103870872 uncharacterized LOC103870872
LOC103870890 TIMELESS-interacting protein
LOC103871543 chromatin accessibility complex protein 1
LOC103871561 DNA ligase 1
LOC103871570 DNA polymerase epsilon catalytic subunit A
LOC103871841 uncharacterized protein At4g28440
LOC103872007 RNA polymerase II transcription factor B subunit 5
LOC103872412 probable ubiquitin receptor RAD23a
LOC103873814 DNA polymerase delta catalytic subunit
LOC103873888 chromatin assembly factor 1 subunit FAS2
LOC103874521 cyclin-H1-1-like
Symbol Function*
LOC100233055 cullin-4
LOC100241432 DNA polymerase epsilon catalytic subunit A
LOC100241865 DNA polymerase delta small subunit
LOC100242771 putative E3 ubiquitin-protein ligase UBR7
LOC100244193 replication protein A 14 kDa subunit B
LOC100244238 probable DNA primase large subunit
LOC100244281 ISWI chromatin-remodeling complex ATPase CHR11
LOC100245502 replication factor C subunit 4
LOC100245663 DNA repair protein UVH3
LOC100245725 replication protein A 32 kDa subunit A
LOC100246202 replication factor C subunit 2
LOC100246530 DNA polymerase delta catalytic subunit
LOC100247566 cyclin-dependent kinase D-3
LOC100247946 replication factor C subunit 3
LOC100248410 39S ribosomal protein L47, mitochondrial
LOC100248466 proliferating cell nuclear antigen-like
LOC100249625 replication factor C subunit 1
LOC100249755 probable RNA polymerase II transcription factor B subunit 1-1
LOC100250174 DNA repair helicase XPB1
LOC100250987 histone acetyltransferase type B catalytic subunit
LOC100253251 protein CHROMATIN REMODELING 8
LOC100254758 replication protein A 32 kDa subunit B
LOC100255412 replication protein A 70 kDa DNA-binding subunit B
LOC100256907 DNA ligase 1
LOC100257823 DNA polymerase epsilon subunit B
LOC100258972 uncharacterized LOC100258972
LOC100259015 uncharacterized protein At4g28440
LOC100259489 RING-box protein 1a
LOC100259948 separase
LOC100261877 DNA replication licensing factor MCM5
LOC100262207 DNA polymerase epsilon subunit 3
LOC100263039 replication protein A 70 kDa DNA-binding subunit A
LOC100263828 RINT1-like protein MAG2
LOC100265019 phosphoinositide phosphatase SAC1
LOC100265381 uncharacterized protein At4g28440
LOC100265910 chaperone protein dnaJ 6
LOC100266082 replication factor C subunit 3
LOC100266163 DNA replication licensing factor MCM2
LOC100267599 DNA replication licensing factor MCM7
LOC100268119 replication protein A 70 kDa DNA-binding subunit A
Symbol Function*
LOC7454020 DNA polymerase epsilon subunit B
LOC7454390 calcium-binding protein PBP1
LOC7459070 TIMELESS-interacting protein
LOC7460974 replication factor C subunit 2
LOC7462834 ubiquitin receptor RAD23b
LOC7463320 DNA ligase 1
LOC7466453 replication factor C subunit 3
LOC7466858 DNA polymerase delta catalytic subunit
LOC7472571 DNA replication licensing factor MCM3
LOC7476798 ubiquitin receptor RAD23b
LOC7478554 proliferating cell nuclear antigen
LOC7479266 replication factor C subunit 2
LOC7479528 DNA polymerase delta small subunit
LOC7481501 proliferating cell nuclear antigen
LOC7483976 DNA polymerase delta small subunit
LOC7491255 DNA replication licensing factor MCM7
LOC7497418 calcium-binding protein PBP1
Symbol Function*
LOC11408397 DNA polymerase delta subunit 3
LOC11410157 uncharacterized LOC11410157
LOC11425381 importin beta-like SAD2 homolog
LOC11432620 homologous-pairing protein 2 homolog
LOC11436447 DNA repair protein RAD4
LOC11437014 DNA polymerase delta small subunit
LOC11440570 DNA replication licensing factor MCM4
LOC11442607 DNA ligase 6
LOC11442992 DNA repair endonuclease UVH1
LOC11444264 DNA polymerase I A, chloroplastic/mitochondrial
LOC11444798 DNA polymerase I A, chloroplastic/mitochondrial
LOC11445193 DNA polymerase epsilon catalytic subunit A
LOC11446020 replication protein A 32 kDa subunit B
LOC25481878 replication protein A 32 kDa subunit A
LOC25485570 ribonuclease H2 subunit A
LOC25485575 replication protein A 14 kDa subunit B
LOC25489857 DNA polymerase delta catalytic subunit
LOC25490757 proliferating cell nuclear antigen
LOC25492173 replication factor C subunit 1
LOC25492285 DNA polymerase epsilon subunit 3
LOC25492370 DNA ligase 1
LOC25495823 replication factor C subunit 3


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