ATTED-II

ver. 9.2

FAQ

About coexpression


About network drawing


Miscellaneous




Coex_1

Is there any criteria for choosing the best rank of Mutual Rank.

Though we cannot provide universal MR threshold, most success cases used strong coexpression having MR<20.
https://www.ncbi.nlm.nih.gov/pubmed/20383554

NetworkDrawer_1

How does NetworkDrawer select genes to draw gene network?

The actual procedure of NetworkDrawer is as follows:

NetworkDrawer_1

How does ATTED-II draw the gene network?

We used "neato" function from Graphviz as follows:

NetworkDrawer_1

Can I retrieve genes specifically expressed in the samples I specify?

Sorry. We do not prepare such function.


NetworkDrawer_1

Is there any similar coexpression database with ATTED-II?

Yes. Many coexpression databases are available.