This form simply adds information about gene function and predicted subcellular localization for query genes.
Gene functions are based on TAIR annotation.
Subcellular localizations are predicted by TargetP and WoLF PSORT
EdgeAnnotation Extracting coexpression data for query gene pairs
AGI codes
AGI pairs
For all possible pairs in query genes.
For user-defined gene pair; Each line should contain tab-delimitated gene pair.
This form returns coexpression data with following information
PPIs described in TAIR and IntAct.
Conserved coexpression with mammals (Human, Mouse or Rat in COXPRESdb).
Common pathways defined by KEGG, AraCyc or KaPPA-View.
CoExSearch Unified coexpressed gene list from multiple query genes
AGI codes
Coex masure:
Target:
This form returns unified coexpressed gene list from a couple of query genes (usually less than 10) that strongly coexpress with each other.
To construct unified coexpressed gene list:
1. ATTED-II first makes coexpressed genes list for each of query genes.
2. Then the MR of each gene list is averaged.
3. Finally, coexpressed genes are sorted along with the averaged MR
CoexVersion Retrieving previously released coexpression data
