Draw:

• <NetworkDrawer>
  Drawing gene networks in multiple query genes.

  This form has three functions as below. The example is genes annotated as "UDP-glycosyltransferase activity". Following files for network drawing is also available: tab-delimited text file, Pajek file (.net), Cytoscape file (.sif) Maximam number of input genes is limited to 100 for network drawing on ATTED-II. Delimitate loci with <RETURN> or <TAB>. The coexpressed rank was calculated from 1388 GeneChip data.

  Functions

  (1) Drawing coexpressed gene network within query genes	(2) Making coexpressed gene list from coexpressed query genes
  Do not draw singlet nodes of query Do not draw PPIs Draw 1-path PPIs Draw 2-path PPIs	Provided as [Search > CoexSearch] (Since 2010.03.05)

  
  

• <HCluster>
  Hierarchical clustering for query genes.

  Single linkage method Averaged linkage method Ward method

  This form performs hierarchical clustering for query genes.

• <CoexViewer>
  Coexpression viewer

  gene1: gene2: do not use cache

  This form returns the detail characteristics of a focused gene pair in addition to the normal correlation value. Scatter plots and tables to analyze strongly contributed samples for the coexpression of focused gene pair. Stability of the coexpression* of focued gene pair. Input two AGI codes.



• <GOPathDrawer>
  Draw multiple GO hierarchy.

  GO IDs colored by yellow GO IDs colored by green GO IDs colored by blue

  This form draws hierarchical relationships of query GO terms.

• <MiniTool>
  Mini tools for Excel users

  [more]