[←][→] ath   AT2G27100 Gene
functional annotation
Function   C2H2 zinc-finger protein SERRATE (SE)  
GO BP
GO:2000011 [list] [network] regulation of adaxial/abaxial pattern formation  (2 genes)  IMP  
GO:0031053 [list] [network] primary miRNA processing  (12 genes)  IMP  
GO:0010267 [list] [network] production of ta-siRNAs involved in RNA interference  (15 genes)  IMP  
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IMP  
GO:0048509 [list] [network] regulation of meristem development  (125 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO:0048367 [list] [network] shoot system development  (812 genes)  IMP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  TAS  
GO CC
GO:0005846 [list] [network] nuclear cap binding complex  (3 genes)  IPI  
GO:0010445 [list] [network] nuclear dicing body  (6 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISS  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0003677 [list] [network] DNA binding  (2280 genes)  ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_565635.1 
BLAST NP_565635.1 
Orthologous [Ortholog page] LOC541879 (zma)  LOC732796 (zma)  LOC4346039 (osa)  LOC9270793 (osa)  LOC11405241 (mtr)  LOC25488483 (mtr)  LOC100254817 (vvi)  LOC100266053 (vvi)  LOC100279372 (zma)  LOC100382107 (zma)  LOC100788714 (gma)  LOC100811300 (gma)  LOC100817569 (gma)  LOC101252107 (sly)  LOC103829649 (bra)  LOC103864752 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_565635.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for NP_565635.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with SE on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.7 AT5G51300 splicing factor-like protein [detail] 835204
8.4 ELF7 hydroxyproline-rich glycoprotein family protein [detail] 844312
8.2 AT1G10390 Nucleoporin autopeptidase [detail] 837579
7.6 AT3G06480 DEAD box RNA helicase family protein [detail] 819825
7.6 SMU2 RED family protein [detail] 817187
7.6 AT2G44710 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 819079
6.2 bZIP16 basic region/leucine zipper transcription factor 16 [detail] 818118
5.9 AT1G24267 bZIP transcription factor, putative (DUF1664) [detail] 839042
5.8 ECR1 E1 C-terminal related 1 [detail] 832038
Coexpressed
gene list		 [Coexpressed gene list for SE]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266315_at
266315_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266315_at
266315_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266315_at
266315_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817252      
Refseq ID (protein) NP_565635.1 


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