[←][→] ath   AT2G28290 Gene
functional annotation
Function   P-loop containing nucleoside triphosphate hydrolases superfamily protein  
GO BP
GO:0010199 [list] [network] organ boundary specification between lateral organs and the meristem  (9 genes)  IGI  
GO:0043044 [list] [network] ATP-dependent chromatin remodeling  (18 genes)  IBA NAS  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IBA  
GO:0040029 [list] [network] regulation of gene expression, epigenetic  (210 genes)  IMP  
GO:0009611 [list] [network] response to wounding  (212 genes)  IEP  
GO:0009908 [list] [network] flower development  (447 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0008094 [list] [network] DNA-dependent ATPase activity  (82 genes)  IBA  
GO:0003682 [list] [network] chromatin binding  (126 genes)  IPI  
GO:0016887 [list] [network] ATPase activity  (507 genes)  ISS  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IBA  
KEGG
Protein NP_001077971.1  NP_001325347.1  NP_001325348.1  NP_001325349.1  NP_850116.1  NP_850117.1 
BLAST NP_001077971.1  NP_001325347.1  NP_001325348.1  NP_001325349.1  NP_850116.1  NP_850117.1 
Orthologous [Ortholog page] LOC7475387 (ppo)  LOC9267065 (osa)  LOC11418353 (mtr)  LOC100254600 (vvi)  LOC100383943 (zma)  LOC100790172 (gma)  LOC100815262 (gma)  LOC101247785 (sly)  LOC103857840 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001077971.1)
nucl 10  (predict for NP_001325347.1)
nucl 10  (predict for NP_001325348.1)
nucl 10  (predict for NP_001325349.1)
nucl 10  (predict for NP_850116.1)
nucl 10  (predict for NP_850117.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001077971.1)
other 8  (predict for NP_001325347.1)
other 8  (predict for NP_001325348.1)
other 8  (predict for NP_001325349.1)
other 8  (predict for NP_850116.1)
other 8  (predict for NP_850117.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SYD on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
18.3 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein [detail] 816303
16.7 BIG auxin transport protein (BIG) [detail] 820398
16.6 UPL1 LOW protein: E3 ubiquitin ligase-like protein [detail] 842036
15.1 SDG2 SET domain protein 2 [detail] 827183
14.0 BRM transcription regulatory protein SNF2 [detail] 819210
12.4 CHR4 chromatin remodeling 4 [detail] 834510
12.3 AT5G61140 U5 small nuclear ribonucleoprotein helicase [detail] 836235
12.3 EMB2016 embryo defective 2016 [detail] 819736
11.7 AT3G15120 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 820743
11.7 SAB HYPERSENSITIVE TO PI STARVATION 4 [detail] 842193
10.3 DME HhH-GPD base excision DNA repair family protein [detail] 830335
10.3 AT5G58410 HEAT/U-box domain-containing protein [detail] 835954
9.9 PTM PHD type transcription factor with transmembrane domain protein (PTM) [detail] 833475
9.7 G2484-1 G2484-1 protein [detail] 827445
9.6 GSL03 glucan synthase-like 3 [detail] 817755
9.5 ATM Serine/Threonine-kinase ATM-like protein [detail] 823975
9.4 MOM ATP-dependent helicase family protein [detail] 837322
7.6 EDM2 ENHANCED DOWNY MILDEW 2 [detail] 835632
7.6 AT1G58060 RNA helicase family protein [detail] 842173
7.1 DCL4 dicer-like 4 [detail] 832154
6.8 NRPD1B nuclear RNA polymerase D1B [detail] 818591
4.7 DML1 demeter-like 1 [detail] 818224
Coexpressed
gene list		 [Coexpressed gene list for SYD]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265542_at
265542_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265542_at
265542_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265542_at
265542_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817375      
Refseq ID (protein) NP_001077971.1 
NP_001325347.1 
NP_001325348.1 
NP_001325349.1 
NP_850116.1 
NP_850117.1 


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