[←][→] ath   AT2G30260 Gene
functional annotation
Function   U2 small nuclear ribonucleoprotein B  
GO BP
GO:0000354 [list] [network] cis assembly of pre-catalytic spliceosome  (1 genes)  TAS  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0015030 [list] [network] Cajal body  (16 genes)  IDA  
GO:0005686 [list] [network] U2 snRNP  (32 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001324159.1  NP_180585.1 
BLAST NP_001324159.1  NP_180585.1 
Orthologous [Ortholog page] AT1G06960 (ath)  LOC4332557 (osa)  LOC7498150 (ppo)  LOC11416715 (mtr)  LOC100248478 (vvi)  LOC100283511 (zma)  LOC100383254 (zma)  LOC100499914 (gma)  LOC100805822 (gma)  LOC101249376 (sly)  LOC103867968 (bra) 
Subcellular
localization
wolf
nucl 7,  golg 1,  mito 1,  cysk 1,  golg_plas 1  (predict for NP_001324159.1)
nucl 6,  cyto_nucl 4,  cyto 1  (predict for NP_180585.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001324159.1)
other 9  (predict for NP_180585.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03040 Spliceosome 2
Genes directly connected with U2B'' on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.1 EIF3K eukaryotic translation initiation factor 3K [detail] 829461
7.0 AT1G71730 hypothetical protein [detail] 843503
6.7 AT1G30880 hypothetical protein [detail] 839972
5.3 AT3G24570 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [detail] 822053
4.6 DIM1B Ribosomal RNA adenine dimethylase family protein [detail] 836768
Coexpressed
gene list		 [Coexpressed gene list for U2B'']
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255871_at
255871_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255871_at
255871_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255871_at
255871_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817576      
Refseq ID (protein) NP_001324159.1 
NP_180585.1 


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