[←][→] ath   AT1G06960 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO:0009631 [list] [network] cold acclimation  (59 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0015030 [list] [network] Cajal body  (16 genes)  IDA  
GO:0005686 [list] [network] U2 snRNP  (32 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001077472.1  NP_001318937.1  NP_001321351.1  NP_001321352.1  NP_001321353.1  NP_850936.1 
BLAST NP_001077472.1  NP_001318937.1  NP_001321351.1  NP_001321352.1  NP_001321353.1  NP_850936.1 
Orthologous [Ortholog page] U2B'' (ath)  LOC4332557 (osa)  LOC7498150 (ppo)  LOC11416715 (mtr)  LOC100248478 (vvi)  LOC100283511 (zma)  LOC100383254 (zma)  LOC100499914 (gma)  LOC100805822 (gma)  LOC101249376 (sly)  LOC103867968 (bra) 
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for NP_001077472.1)
nucl 5,  cyto 3,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001318937.1)
nucl 6,  cyto 1,  chlo 1,  plas 1,  extr 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001321351.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001321352.1)
chlo 9,  mito 1  (predict for NP_001321353.1)
nucl 6,  cyto 3  (predict for NP_850936.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001077472.1)
other 9  (predict for NP_001318937.1)
other 9  (predict for NP_001321351.1)
other 6,  mito 4  (predict for NP_001321352.1)
mito 8  (predict for NP_001321353.1)
other 9  (predict for NP_850936.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03060 Protein export 2
Genes directly connected with AT1G06960 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.1 AT5G14850 Alg9-like mannosyltransferase family [detail] 831337
5.1 AT5G65740 zinc ion binding protein [detail] 836703
5.0 AT5G05670 signal recognition particle binding protein [detail] 830451
4.2 ZCF61 E3 Ubiquitin ligase family protein [detail] 842247
Coexpressed
gene list		 [Coexpressed gene list for AT1G06960]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256052_at
256052_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256052_at
256052_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256052_at
256052_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837206      
Refseq ID (protein) NP_001077472.1 
NP_001318937.1 
NP_001321351.1 
NP_001321352.1 
NP_001321353.1 
NP_850936.1 


The preparation time of this page was 0.2 [sec].