[←][→] ath   AT2G42270 Gene
functional annotation
Function   U5 small nuclear ribonucleoprotein helicase  
GO BP
GO:0000388 [list] [network] spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)  (2 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0071014 [list] [network] post-mRNA release spliceosomal complex  (12 genes)  IBA  
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IBA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IBA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_181756.1 
BLAST NP_181756.1 
Orthologous [Ortholog page] emb1507 (ath)  LOC4328024 (osa)  LOC7463125 (ppo)  LOC11423909 (mtr)  LOC100244096 (vvi)  LOC100780515 (gma)  LOC100816176 (gma)  LOC101254105 (sly)  LOC101255504 (sly)  LOC103633484 (zma)  LOC103829399 (bra)  LOC103851964 (bra)  LOC107276130 (osa) 
Subcellular
localization
wolf
cyto 9,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_181756.1)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for NP_181756.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT2G42270 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.6 AT2G39580 zinc finger C3H1 domain protein [detail] 818543
7.4 SDG2 SET domain protein 2 [detail] 827183
7.1 AT2G42330 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [detail] 818834
Coexpressed
gene list		 [Coexpressed gene list for AT2G42270]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267627_at
267627_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267627_at
267627_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267627_at
267627_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818828      
Refseq ID (protein) NP_181756.1 


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