[←][→] ath   AT1G20960 Gene
functional annotation
Function   U5 small nuclear ribonucleoprotein helicase  
GO BP
GO:0000388 [list] [network] spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)  (2 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (173 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  NAS  
GO CC
GO:0071014 [list] [network] post-mRNA release spliceosomal complex  (12 genes)  IBA  
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IBA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IBA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA IBA ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001185050.1  NP_173520.1 
BLAST NP_001185050.1  NP_173520.1 
Orthologous [Ortholog page] AT2G42270 (ath)  LOC4328024 (osa)  LOC7463125 (ppo)  LOC11423909 (mtr)  LOC100244096 (vvi)  LOC100780515 (gma)  LOC100816176 (gma)  LOC101254105 (sly)  LOC101255504 (sly)  LOC103633484 (zma)  LOC103829399 (bra)  LOC103851964 (bra)  LOC107276130 (osa) 
Subcellular
localization
wolf
cyto 9,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_001185050.1)
cyto 9,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_173520.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for NP_001185050.1)
mito 5,  other 3  (predict for NP_173520.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath04120 Ubiquitin mediated proteolysis 3
ath03013 RNA transport 2
Genes directly connected with emb1507 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
17.1 SUS2 Pre-mRNA-processing-splicing factor [detail] 844347
13.9 UPL2 ubiquitin-protein ligase 2 [detail] 843368
12.2 BIG auxin transport protein (BIG) [detail] 820398
11.8 EIF4G eukaryotic translation initiation factor 4G [detail] 825194
10.8 AT3G26560 ATP-dependent RNA helicase [detail] 822264
10.1 DCAF1 DDB1-CUL4 associated factor 1 [detail] 829244
9.5 ABO1 IKI3 family protein [detail] 831213
8.6 TOC159 translocon at the outer envelope membrane of chloroplasts 159 [detail] 827934
8.5 LNO1 Nuclear pore complex protein [detail] 842002
7.2 AFH14 Formin Homology 14 [detail] 840068
6.7 TOC132 multimeric translocon complex in the outer envelope membrane 132 [detail] 816165
Coexpressed
gene list		 [Coexpressed gene list for emb1507]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262800_at
262800_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262800_at
262800_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262800_at
262800_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838690      
Refseq ID (protein) NP_001185050.1 
NP_173520.1 


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