[←][→] ath   AT2G43810 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0030490 [list] [network] maturation of SSU-rRNA  (36 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0005688 [list] [network] U6 snRNP  (11 genes)  IBA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0000932 [list] [network] P-body  (56 genes)  IBA  
GO:0005732 [list] [network] small nucleolar ribonucleoprotein complex  (88 genes)  IBA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001078052.1  NP_001318419.1  NP_181909.1 
BLAST NP_001078052.1  NP_001318419.1  NP_181909.1 
Orthologous [Ortholog page] LSM6A (ath)  LOC4329449 (osa)  LOC7464596 (ppo)  LOC7472468 (ppo)  LOC11420271 (mtr)  LOC100192719 (zma)  LOC100259432 (vvi)  LOC100306112 (gma)  LOC100797765 (gma)  LOC101268815 (sly)  LOC103830231 (bra)  LOC103841827 (bra)  LOC103862924 (bra)  LOC112936013 (osa) 
Subcellular
localization
wolf
cyto 4,  chlo 2,  nucl 2,  extr 1  (predict for NP_001078052.1)
cyto 4,  chlo 2,  nucl 2,  extr 1  (predict for NP_001318419.1)
cyto 4,  chlo 2,  nucl 2,  extr 1  (predict for NP_181909.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078052.1)
other 8  (predict for NP_001318419.1)
other 8  (predict for NP_181909.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03018 RNA degradation 2
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with LSM6B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.4 AT2G27775 PPR containing protein [detail] 817324
7.3 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein [detail] 831005
6.8 RUXF small nuclear ribonucleoprotein F [detail] 829145
5.6 AT4G37020 initiation factor 4A-like protein [detail] 829856
Coexpressed
gene list		 [Coexpressed gene list for LSM6B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260564_at
260564_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260564_at
260564_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260564_at
260564_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818985      
Refseq ID (protein) NP_001078052.1 
NP_001318419.1 
NP_181909.1 


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