[←][→] ath   AT3G05680 Gene
functional annotation
Function   embryo defective 2016  
GO BP
GO:0080009 [list] [network] mRNA methylation  (6 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  NAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001319481.1  NP_187219.5 
BLAST NP_001319481.1  NP_187219.5 
Orthologous [Ortholog page] LOC7488085 (ppo)  LOC25483684 (mtr)  LOC100246722 (vvi)  LOC100274006 (zma)  LOC100787719 (gma)  LOC100793152 (gma)  LOC101258924 (sly)  LOC103859111 (bra)  LOC107277724 (osa) 
Subcellular
localization
wolf
nucl 6,  plas 2,  chlo 1,  cyto 1,  cysk 1  (predict for NP_001319481.1)
nucl 6,  plas 2,  chlo 1,  cyto 1,  cysk 1  (predict for NP_187219.5)
Subcellular
localization
TargetP
other 5  (predict for NP_001319481.1)
other 5  (predict for NP_187219.5)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03013 RNA transport 2
ath03040 Spliceosome 2
Genes directly connected with EMB2016 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
14.3 SUS2 Pre-mRNA-processing-splicing factor [detail] 844347
12.3 SYD P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 817375
11.9 KAK HECT ubiquitin protein ligase family protein KAK [detail] 830017
10.3 LBA1 RNA helicase [detail] 834747
10.0 GRL transcription activator [detail] 818077
8.6 LNO1 Nuclear pore complex protein [detail] 842002
8.2 VCR varicose-like protein [detail] 820529
7.1 AT3G17850 Protein kinase superfamily protein [detail] 821054
Coexpressed
gene list		 [Coexpressed gene list for EMB2016]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258891_at
258891_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258891_at
258891_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258891_at
258891_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819736      
Refseq ID (protein) NP_001319481.1 
NP_187219.5 


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