functional annotation |
Function |
ARM repeat superfamily protein |
|
GO BP |
|
GO CC |
|
GO MF |
|
KEGG |
ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes) |
|
Protein |
NP_001189828.1
NP_001189829.1
NP_001326372.1
NP_001326373.1
NP_187305.5
|
BLAST |
NP_001189828.1
NP_001189829.1
NP_001326372.1
NP_001326373.1
NP_187305.5
|
Orthologous |
[Ortholog page]
LOC4336577 (osa)
LOC11431978 (mtr)
LOC100193917 (zma)
LOC100256070 (vvi)
LOC100796965 (gma)
LOC100798087 (gma)
LOC101267297 (sly)
LOC103859164 (bra)
LOC103870740 (bra)
|
Subcellular localization wolf |
plas 6,
nucl 1,
vacu 1,
mito 1,
E.R. 1,
cyto_nucl 1,
cysk_nucl 1
|
(predict for NP_001189828.1)
|
plas 6,
nucl 1,
vacu 1,
mito 1,
E.R. 1,
cyto_nucl 1,
cysk_nucl 1
|
(predict for NP_001189829.1)
|
plas 6,
nucl 1,
vacu 1,
mito 1,
E.R. 1,
cyto_nucl 1,
cysk_nucl 1
|
(predict for NP_001326372.1)
|
plas 6,
nucl 1,
vacu 1,
mito 1,
E.R. 1,
cyto_nucl 1,
cysk_nucl 1
|
(predict for NP_001326373.1)
|
plas 6,
nucl 1,
vacu 1,
mito 1,
E.R. 1,
cyto_nucl 1,
cysk_nucl 1
|
(predict for NP_187305.5)
|
|
Subcellular localization TargetP |
scret 4,
chlo 4
|
(predict for NP_001189828.1)
|
scret 4,
chlo 4
|
(predict for NP_001189829.1)
|
scret 4,
chlo 4
|
(predict for NP_001326372.1)
|
scret 4,
chlo 4
|
(predict for NP_001326373.1)
|
scret 4,
chlo 4
|
(predict for NP_187305.5)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath03008 |
Ribosome biogenesis in eukaryotes |
10 |
|
ath03020 |
RNA polymerase |
2 |
|
Genes directly connected with AT3G06530 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
18.2 |
AT3G11964 |
RIBOSOMAL RNA PROCESSING 5 |
[detail] |
820370 |
17.0 |
NRPA1 |
nuclear RNA polymerase A1 |
[detail] |
824935 |
14.9 |
AT4G04940 |
transducin family protein / WD-40 repeat family protein |
[detail] |
825833 |
14.7 |
AT2G34357 |
ARM repeat superfamily protein |
[detail] |
2745580 |
14.7 |
NRPA2 |
nuclear RNA polymerase A2 |
[detail] |
839872 |
13.9 |
AT3G21540 |
transducin family protein / WD-40 repeat family protein |
[detail] |
821708 |
13.7 |
EMB2788 |
ribosome 60S biogenesis amino-terminal protein |
[detail] |
828809 |
13.4 |
NOV |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein |
[detail] |
827009 |
12.8 |
AT3G57940 |
GNAT acetyltransferase (DUF699) |
[detail] |
824963 |
12.2 |
AT1G10490 |
GNAT acetyltransferase (DUF699) |
[detail] |
837589 |
11.9 |
AT5G64420 |
DNA polymerase V family |
[detail] |
836563 |
11.7 |
WDR55 |
transducin family protein / WD-40 repeat family protein |
[detail] |
817987 |
10.6 |
AT4G30990 |
ARM repeat superfamily protein |
[detail] |
829224 |
9.4 |
AT1G77550 |
tubulin-tyrosine ligase |
[detail] |
844091 |
|
Coexpressed gene list |
[Coexpressed gene list for AT3G06530]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
258505_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
258505_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
258505_at
X axis is samples (xls file), and Y axis is log-expression.
|