[←][→] ath   AT3G07610 Gene
functional annotation
Function   Transcription factor jumonji (jmjC) domain-containing protein  
GO BP
GO:0033169 [list] [network] histone H3-K9 demethylation  (7 genes)  IGI IMP  
GO:0070919 [list] [network] production of siRNA involved in chromatin silencing by small RNA  (8 genes)  IMP  
GO:0032776 [list] [network] DNA methylation on cytosine  (13 genes)  IGI IMP  
GO:0080188 [list] [network] RNA-directed DNA methylation  (20 genes)  IMP  
GO:0060969 [list] [network] negative regulation of gene silencing  (24 genes)  IMP  
GO:0009555 [list] [network] pollen development  (337 genes)  IMP  
GO:0048366 [list] [network] leaf development  (338 genes)  IMP  
GO:0009908 [list] [network] flower development  (447 genes)  IMP  
GO:0055114 [list] [network] oxidation-reduction process  (1468 genes)  IEA  
GO:0010468 [list] [network] regulation of gene expression  (2484 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0032454 [list] [network] histone demethylase activity (H3-K9 specific)  (5 genes)  IDA IMP ISS  
GO:0031490 [list] [network] chromatin DNA binding  (27 genes)  IDA  
GO:0051213 [list] [network] dioxygenase activity  (147 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001078121.1  NP_001189838.1  NP_187418.1 
BLAST NP_001078121.1  NP_001189838.1  NP_187418.1 
Orthologous [Ortholog page] AT4G00990 (ath)  LOC4328036 (osa)  LOC4331234 (osa)  LOC4333174 (osa)  LOC7475185 (ppo)  LOC7477121 (ppo)  LOC7486369 (ppo)  LOC11429788 (mtr)  LOC11431621 (mtr)  LOC11433685 (mtr)  LOC11443736 (mtr)  LOC11444490 (mtr)  LOC11445522 (mtr)  LOC25484213 (mtr)  LOC25499741 (mtr)  LOC100258626 (vvi)  LOC100261347 (vvi)  LOC100280238 (zma)  LOC100780803 (gma)  LOC100797799 (gma)  LOC100800662 (gma)  LOC100805723 (gma)  LOC101252668 (sly)  LOC101260929 (sly)  LOC101265193 (sly)  LOC103643664 (zma)  LOC103654986 (zma)  LOC103836863 (bra)  LOC103858823 (bra)  LOC103870649 (bra) 
Subcellular
localization
wolf
nucl 7,  cyto_nucl 5,  cyto 2  (predict for NP_001078121.1)
nucl 7,  cyto 2  (predict for NP_001189838.1)
nucl 8,  cyto 1  (predict for NP_187418.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078121.1)
other 8  (predict for NP_001189838.1)
other 8  (predict for NP_187418.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with IBM1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.3 GTA2 global transcription factor group A2 [detail] 826391
6.7 PI-4KBETA1 phosphatidylinositol 4-OH kinase beta1 [detail] 836528
6.4 LINC4 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 [detail] 836706
Coexpressed
gene list		 [Coexpressed gene list for IBM1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259252_at
259252_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259252_at
259252_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259252_at
259252_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819952      
Refseq ID (protein) NP_001078121.1 
NP_001189838.1 
NP_187418.1 


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