[←][→] ath   AT4G00990 Gene
functional annotation
Function   Transcription factor jumonji (jmjC) domain-containing protein  
GO BP
GO:0033169 [list] [network] histone H3-K9 demethylation  (7 genes)  IBA IDA  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (63 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IMP  
GO CC
GO:0000785 [list] [network] chromatin  (160 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0032454 [list] [network] histone demethylase activity (H3-K9 specific)  (5 genes)  IBA IDA  
GO:0031490 [list] [network] chromatin DNA binding  (27 genes)  IBA  
GO:0000976 [list] [network] transcription regulatory region sequence-specific DNA binding  (204 genes)  IBA  
KEGG
Protein NP_001328649.1  NP_001328650.1  NP_192008.3 
BLAST NP_001328649.1  NP_001328650.1  NP_192008.3 
Orthologous [Ortholog page] IBM1 (ath)  LOC4328036 (osa)  LOC4331234 (osa)  LOC4333174 (osa)  LOC7475185 (ppo)  LOC7477121 (ppo)  LOC7486369 (ppo)  LOC11429788 (mtr)  LOC11431621 (mtr)  LOC11433685 (mtr)  LOC11443736 (mtr)  LOC11444490 (mtr)  LOC11445522 (mtr)  LOC25484213 (mtr)  LOC25499741 (mtr)  LOC100258626 (vvi)  LOC100261347 (vvi)  LOC100280238 (zma)  LOC100780803 (gma)  LOC100797799 (gma)  LOC100800662 (gma)  LOC100805723 (gma)  LOC101252668 (sly)  LOC101260929 (sly)  LOC101265193 (sly)  LOC103643664 (zma)  LOC103654986 (zma)  LOC103836863 (bra)  LOC103858823 (bra)  LOC103870649 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001328649.1)
nucl 6,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001328650.1)
nucl 7,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_192008.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001328649.1)
other 8  (predict for NP_001328650.1)
other 8  (predict for NP_192008.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT4G00990 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 PKL chromatin remodeling factor CHD3 (PICKLE) [detail] 817055
6.1 ATK2 kinesin 2 [detail] 828826
6.0 TTN8 Structural maintenance of chromosomes (SMC) family protein [detail] 824632
5.6 AT3G10440 Shugoshin C terminus [detail] 820208
5.4 AT3G19515 apoptosis inhibitor [detail] 821486
5.0 AT4G10890 DDE family endonuclease [detail] 826688
Coexpressed
gene list		 [Coexpressed gene list for AT4G00990]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255656_at
255656_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255656_at
255656_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255656_at
255656_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827933      
Refseq ID (protein) NP_001328649.1 
NP_001328650.1 
NP_192008.3 


The preparation time of this page was 0.1 [sec].