ATTED-II : GeneID search result

[←][→] ath AT3G07860 Gene

functional annotation

Function

Ubiquitin-like superfamily protein

GO BP

GO:0000398 [list] [network] mRNA splicing, via spliceosome

(172 genes)

IEA

GO CC

GO:0005689 [list] [network] U12-type spliceosomal complex	(18 genes)	IEA
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

KEGG

Protein

NP_001325550.1 NP_001325551.1 NP_187443.2

BLAST

NP_001325550.1 NP_001325551.1 NP_187443.2

Orthologous

[Ortholog page] LOC4337305 (osa) LOC11446596 (mtr) LOC100381558 (zma) LOC100815924 (gma) LOC101252038 (sly) LOC103859246 (bra) LOC109121397 (vvi)

Subcellular
localization
wolf

cyto 4, nucl 3, mito 1, cysk_nucl 1, nucl_plas 1	(predict for NP_001325550.1)
cyto 4, nucl 3, chlo 1, extr 1, cysk_nucl 1, nucl_plas 1	(predict for NP_001325551.1)
cyto 4, nucl 3, mito 1, cysk_nucl 1, nucl_plas 1	(predict for NP_187443.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001325550.1)
other 8	(predict for NP_001325551.1)
other 8	(predict for NP_187443.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	5
ath03008	Ribosome biogenesis in eukaryotes	2

Genes directly connected with AT3G07860 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
10.1	AT3G07750	3'-5'-exoribonuclease family protein	[detail]	819966
8.7	AT3G46210	Ribosomal protein S5 domain 2-like superfamily protein	[detail]	823766
8.6	AT3G61100	Putative endonuclease or glycosyl hydrolase	[detail]	825282
5.8	AT4G30680	Initiation factor eIF-4 gamma, MA3	[detail]	829191
4.5	AT1G01715	hypothetical protein	[detail]	28716021

Coexpressed
gene list

[Coexpressed gene list for AT3G07860]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258687_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258687_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258687_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	819977
Refseq ID (protein)	NP_001325550.1
	NP_001325551.1
	NP_187443.2

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