[←][→] ath   AT3G13940 Gene
functional annotation
Function   DNA binding / DNA-directed RNA polymerase  
GO BP
GO:0001188 [list] [network] RNA polymerase I preinitiation complex assembly  (1 genes)  IBA  
GO:0006362 [list] [network] transcription elongation from RNA polymerase I promoter  (1 genes)  IBA  
GO:0042790 [list] [network] nucleolar large rRNA transcription by RNA polymerase I  (2 genes)  IBA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (17 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0001054 [list] [network] RNA polymerase I activity  (20 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG ath03020 [list] [network] RNA polymerase (45 genes)
Protein NP_188010.1 
BLAST NP_188010.1 
Orthologous [Ortholog page] LOC4350918 (osa)  LOC11433564 (mtr)  LOC11439671 (mtr)  LOC11441148 (mtr)  LOC100263424 (vvi)  LOC100284469 (zma)  LOC100812427 (gma)  LOC101267531 (sly)  LOC103842476 (bra) 
Subcellular
localization
wolf
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_188010.1)
Subcellular
localization
TargetP
other 9  (predict for NP_188010.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03020 RNA polymerase 2
Genes directly connected with AT3G13940 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.0 AT1G04945 HIT-type Zinc finger family protein [detail] 5007664
10.6 AT3G10530 Transducin/WD40 repeat-like superfamily protein [detail] 820218
10.2 AT4G28450 WD repeat and SOF domain-containing protein 1 [detail] 828962
9.6 AT3G57000 nucleolar essential protein-like protein [detail] 824867
Coexpressed
gene list		 [Coexpressed gene list for AT3G13940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258202_at
258202_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258202_at
258202_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258202_at
258202_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820607      
Refseq ID (protein) NP_188010.1 


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