ATTED-II : GeneID search result

[←][→] ath AT3G15380 Gene

functional annotation

Function

Plasma-membrane choline transporter family protein

GO BP

GO:0015871 [list] [network] choline transport	(1 genes)	IDA IMP
GO:0090603 [list] [network] sieve element differentiation	(3 genes)	IMP
GO:0009663 [list] [network] plasmodesma organization	(4 genes)	IMP
GO:0030100 [list] [network] regulation of endocytosis	(6 genes)	IMP
GO:0010067 [list] [network] procambium histogenesis	(10 genes)	IMP
GO:0010088 [list] [network] phloem development	(10 genes)	IMP
GO:0010497 [list] [network] plasmodesmata-mediated intercellular transport	(15 genes)	IMP
GO:2000012 [list] [network] regulation of auxin polar transport	(24 genes)	IMP
GO:0055088 [list] [network] lipid homeostasis	(44 genes)	IMP
GO:0006897 [list] [network] endocytosis	(60 genes)	IEA
GO:0051510 [list] [network] regulation of unidimensional cell growth	(69 genes)	IMP
GO:0010051 [list] [network] xylem and phloem pattern formation	(73 genes)	IMP
GO:0050801 [list] [network] ion homeostasis	(317 genes)	IMP
GO:0048366 [list] [network] leaf development	(338 genes)	IMP
GO:0016192 [list] [network] vesicle-mediated transport	(417 genes)	IMP
GO:0048364 [list] [network] root development	(482 genes)	IMP
GO:0015031 [list] [network] protein transport	(724 genes)	IMP

GO CC

GO:0009551 [list] [network] secondary plasmodesma	(1 genes)	IMP
GO:0097218 [list] [network] sieve plate	(2 genes)	IDA
GO:0032588 [list] [network] trans-Golgi network membrane	(12 genes)	IDA
GO:0031901 [list] [network] early endosome membrane	(15 genes)	IDA
GO:0031902 [list] [network] late endosome membrane	(61 genes)	IEA
GO:0009524 [list] [network] phragmoplast	(89 genes)	IDA
GO:0009705 [list] [network] plant-type vacuole membrane	(124 genes)	IDA
GO:0005802 [list] [network] trans-Golgi network	(298 genes)	IDA
GO:0005856 [list] [network] cytoskeleton	(368 genes)	IEA
GO:0009506 [list] [network] plasmodesma	(962 genes)	IDA
GO:0055044 [list] [network] symplast	(963 genes)	IMP
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IDA
GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IEA
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0015220 [list] [network] choline transmembrane transporter activity

(1 genes)

IDA

KEGG

Protein

NP_566511.1

BLAST

NP_566511.1

Orthologous

[Ortholog page] LOC4337431 (osa) LOC4337433 (osa) LOC7460829 (ppo) LOC25487357 (mtr) LOC25501237 (mtr) LOC100241764 (vvi) LOC100779959 (gma) LOC100789185 (gma) LOC100803501 (gma) LOC100815939 (gma) LOC101253105 (sly) LOC103645752 (zma) LOC103654439 (zma) LOC103859621 (bra) LOC103869923 (bra)

Subcellular
localization
wolf

plas 7, E.R. 3

(predict for NP_566511.1)

Subcellular
localization
TargetP

other 9, mito 3

(predict for NP_566511.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G15380 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.1	AT2G30700	GPI-anchored protein	[detail]	817621
6.3	AT1G72480	Lung seven transmembrane receptor family protein	[detail]	843580
5.8	emb1427	Spc97 / Spc98 family of spindle pole body (SBP) component	[detail]	844366
5.3	ABCG3	ABC-2 type transporter family protein	[detail]	817351
5.2	AT1G70280	NHL domain-containing protein	[detail]	843364
4.9	AT1G80530	Major facilitator superfamily protein	[detail]	844392
4.3	AT4G17180	O-Glycosyl hydrolases family 17 protein	[detail]	827429

Coexpressed
gene list

[Coexpressed gene list for AT3G15380]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258403_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258403_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258403_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820777
Refseq ID (protein)	NP_566511.1

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