| functional annotation |
| Function |
nuclear RNA polymerase D2B |
|
| GO BP |
|
| GO CC |
|
GO:0005665 [list] [network] RNA polymerase II, core complex
|
(22 genes)
|
IBA
|
 |
|
GO:0005634 [list] [network] nucleus
|
(10793 genes)
|
ISM
|
|
|
| GO MF |
|
GO:0001055 [list] [network] RNA polymerase II activity
|
(19 genes)
|
IBA
|
|
|
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity
|
(59 genes)
|
IBA
|
|
|
GO:0032549 [list] [network] ribonucleoside binding
|
(251 genes)
|
IEA
|
|
|
GO:0003677 [list] [network] DNA binding
|
(2280 genes)
|
IEA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
| KEGG |
|
|
| Protein |
NP_001326261.1
NP_001326262.1
NP_188437.2
|
| BLAST |
NP_001326261.1
NP_001326262.1
NP_188437.2
|
| Orthologous |
[Ortholog page]
LOC778349 (sly)
NRPD2A (ath)
LOC4337169 (osa)
LOC4344774 (osa)
LOC11436034 (mtr)
LOC100037782 (zma)
LOC100256013 (vvi)
LOC100779425 (gma)
LOC100815934 (gma)
LOC101249196 (sly)
LOC103641221 (zma)
LOC103869612 (bra)
|
Subcellular
localization
wolf |
|
chlo 6,
mito 1,
nucl 1,
cysk_nucl 1,
mito_plas 1
|
(predict for NP_001326261.1)
|
|
chlo 6,
mito 1,
nucl 1,
cysk_nucl 1,
mito_plas 1
|
(predict for NP_001326262.1)
|
|
chlo 6,
mito 1,
nucl 1,
cysk_nucl 1,
mito_plas 1
|
(predict for NP_188437.2)
|
|
Subcellular
localization
TargetP |
|
other 5,
mito 4
|
(predict for NP_001326261.1)
|
|
other 5,
mito 4
|
(predict for NP_001326262.1)
|
|
other 5,
mito 4
|
(predict for NP_188437.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath00500 |
Starch and sucrose metabolism |
6 |
 |
Genes directly connected with NRPD2B on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 4.9 |
AT4G36270 |
ATP binding protein |
[detail] |
829784 |
| 4.7 |
DPE1 |
disproportionating enzyme |
[detail] |
836609 |
| 4.6 |
BGLU44 |
B-S glucosidase 44 |
[detail] |
821333 |
| 3.8 |
CRH1 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein |
[detail] |
829785 |
|
Coexpressed
gene list |
[Coexpressed gene list for NRPD2B]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AT3G18090 Gene
