| functional annotation |
| Function |
nuclear RNA polymerase D2A |
|
| GO BP |
|
GO:0030422 [list] [network] production of siRNA involved in RNA interference
|
(34 genes)
|
IGI
IMP
|
 |
|
GO:0006306 [list] [network] DNA methylation
|
(50 genes)
|
IDA
IMP
|
|
|
GO:0035194 [list] [network] posttranscriptional gene silencing by RNA
|
(130 genes)
|
IMP
|
|
|
GO:0050776 [list] [network] regulation of immune response
|
(130 genes)
|
IMP
|
|
|
GO:0031047 [list] [network] gene silencing by RNA
|
(183 genes)
|
IMP
|
|
|
GO:0050832 [list] [network] defense response to fungus
|
(517 genes)
|
IMP
|
|
|
| GO CC |
|
| GO MF |
|
GO:0001055 [list] [network] RNA polymerase II activity
|
(19 genes)
|
IBA
|
|
|
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity
|
(59 genes)
|
IBA
ISS
|
|
|
GO:0032549 [list] [network] ribonucleoside binding
|
(251 genes)
|
IEA
|
|
|
GO:0003677 [list] [network] DNA binding
|
(2280 genes)
|
IEA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_001189957.1
NP_189020.2
|
| BLAST |
NP_001189957.1
NP_189020.2
|
| Orthologous |
[Ortholog page]
LOC778349 (sly)
NRPD2B (ath)
LOC4337169 (osa)
LOC4344774 (osa)
LOC11436034 (mtr)
LOC100037782 (zma)
LOC100256013 (vvi)
LOC100779425 (gma)
LOC100815934 (gma)
LOC101249196 (sly)
LOC103641221 (zma)
LOC103869612 (bra)
|
Subcellular
localization
wolf |
|
chlo 3,
nucl 2,
cysk_nucl 1,
plas 1,
vacu 1,
cyto 1,
mito 1,
golg_plas 1,
E.R._vacu 1,
E.R._plas 1
|
(predict for NP_001189957.1)
|
|
chlo 3,
nucl 2,
cysk_nucl 1,
plas 1,
vacu 1,
cyto 1,
mito 1,
golg_plas 1,
E.R._vacu 1,
E.R._plas 1
|
(predict for NP_189020.2)
|
|
Subcellular
localization
TargetP |
|
other 9
|
(predict for NP_001189957.1)
|
|
other 9
|
(predict for NP_189020.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with NRPD2A on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 8.5 |
SDE3 |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
[detail] |
837047 |
| 7.0 |
AGO4 |
Argonaute family protein |
[detail] |
817246 |
| 6.4 |
NRPD1B |
nuclear RNA polymerase D1B |
[detail] |
818591 |
| 6.2 |
FDM1 |
XH/XS domain-containing protein |
[detail] |
838161 |
| 5.7 |
TRN1 |
tornado 1 |
[detail] |
835648 |
|
Coexpressed
gene list |
[Coexpressed gene list for NRPD2A]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AT3G23780 Gene
