[←][→] ath   AT3G24440 Gene
functional annotation
Function   Fibronectin type III domain-containing protein  
GO BP
GO:0048572 [list] [network] short-day photoperiodism  (4 genes)  IMP  
GO:0048575 [list] [network] short-day photoperiodism, flowering  (4 genes)  IMP  
GO:0051571 [list] [network] positive regulation of histone H3-K4 methylation  (5 genes)  IMP  
GO:0061087 [list] [network] positive regulation of histone H3-K27 methylation  (7 genes)  IMP  
GO:0010048 [list] [network] vernalization response  (12 genes)  IMP  
GO:0031062 [list] [network] positive regulation of histone methylation  (15 genes)  IMP  
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic  (46 genes)  IMP  
GO:0016571 [list] [network] histone methylation  (52 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (157 genes)  IGI  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO:0009908 [list] [network] flower development  (447 genes)  IEA  
GO CC
GO:0005677 [list] [network] chromatin silencing complex  (7 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001327228.1  NP_189087.1 
BLAST NP_001327228.1  NP_189087.1 
Orthologous [Ortholog page] LOC4337793 (osa)  LOC4352406 (osa)  LOC25496889 (mtr)  LOC100256041 (vvi)  LOC100259403 (vvi)  LOC100280056 (zma)  LOC100780157 (gma)  LOC100815645 (gma)  LOC100816128 (gma)  LOC100816714 (gma)  LOC101268103 (sly)  LOC103641378 (zma)  LOC103650592 (zma)  LOC103828636 (bra)  LOC103828637 (bra) 
Subcellular
localization
wolf
nucl 6,  mito 2,  chlo 1,  cysk 1  (predict for NP_001327228.1)
nucl 6,  mito 2,  chlo 1,  cysk 1  (predict for NP_189087.1)
Subcellular
localization
TargetP
chlo 8,  other 5  (predict for NP_001327228.1)
chlo 8,  other 5  (predict for NP_189087.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
Genes directly connected with VRN5 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.2 AT3G19360 Zinc finger (CCCH-type) family protein [detail] 821470
6.2 SLP2 Calcineurin-like metallo-phosphoesterase superfamily protein [detail] 838428
6.1 AT3G51320 Pentatricopeptide repeat (PPR) superfamily protein [detail] 824295
5.5 AT3G52950 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein [detail] 824461
5.4 SRR1 sensitivity to red light reduced protein (SRR1) [detail] 836075
Coexpressed
gene list		 [Coexpressed gene list for VRN5]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256618_at
256618_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256618_at
256618_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256618_at
256618_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 822034      
Refseq ID (protein) NP_001327228.1 
NP_189087.1 


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