[←][→] ath   AT3G45590 Gene
functional annotation
Function   splicing endonuclease 1  
GO BP
GO:0000379 [list] [network] tRNA-type intron splice site recognition and cleavage  (3 genes)  IBA  
GO:0010069 [list] [network] zygote asymmetric cytokinesis in embryo sac  (6 genes)  IGI  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0000214 [list] [network] tRNA-intron endonuclease complex  (3 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0000213 [list] [network] tRNA-intron endonuclease activity  (3 genes)  IBA  
GO:0016829 [list] [network] lyase activity  (412 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
KEGG
Protein NP_001078245.1  NP_190145.1 
BLAST NP_001078245.1  NP_190145.1 
Orthologous [Ortholog page] SEN2 (ath)  AT3G45577 (ath)  LOC4341203 (osa)  LOC4350867 (osa)  LOC7472137 (ppo)  LOC11414349 (mtr)  LOC100255233 (vvi)  LOC100282606 (zma)  LOC100807021 (gma)  LOC100810335 (gma)  LOC101260236 (sly)  LOC103845434 (bra)  LOC103856576 (bra)  LOC107280434 (osa) 
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for NP_001078245.1)
nucl 6,  cyto 3  (predict for NP_190145.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for NP_001078245.1)
other 3,  mito 3  (predict for NP_190145.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SEN1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.6 NRPD7 RNA polymerase Rpb7-like, N-terminal domain-containing protein [detail] 821862
4.3 TAF13 TBP-associated factor 13 [detail] 837962
4.2 AT1G09680 Pentatricopeptide repeat (PPR) superfamily protein [detail] 837496
3.7 AT3G19470 F-box and associated interaction domains-containing protein [detail] 821481
3.1 AT5G05060 Cystatin/monellin superfamily protein [detail] 830388
Coexpressed
gene list		 [Coexpressed gene list for SEN1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252593_at
252593_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252593_at
252593_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252593_at
252593_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823701      
Refseq ID (protein) NP_001078245.1 
NP_190145.1 


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