[←][→] ath   AT3G46960 Gene
functional annotation
Function   RNA helicase, ATP-dependent, SK12/DOB1 protein  
GO BP
GO:0000292 [list] [network] RNA fragment catabolic process  (1 genes)  IMP  
GO:0070478 [list] [network] nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay  (1 genes)  IBA  
GO:0035864 [list] [network] response to potassium ion  (5 genes)  IMP  
GO:0090065 [list] [network] regulation of production of siRNA involved in RNA interference  (5 genes)  IMP  
GO:1904278 [list] [network] positive regulation of wax biosynthetic process  (7 genes)  IGI  
GO:0006813 [list] [network] potassium ion transport  (81 genes)  IMP  
GO:0006401 [list] [network] RNA catabolic process  (97 genes)  IBA  
GO:0016441 [list] [network] posttranscriptional gene silencing  (138 genes)  IMP  
GO CC
GO:0055087 [list] [network] Ski complex  (1 genes)  IBA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IMP  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_001325878.1  NP_001325879.1  NP_190280.5 
BLAST NP_001325878.1  NP_001325879.1  NP_190280.5 
Orthologous [Ortholog page] LOC4328375 (osa)  LOC25490766 (mtr)  LOC100253599 (vvi)  LOC100383871 (zma)  LOC100788432 (gma)  LOC101264125 (sly)  LOC103873280 (bra) 
Subcellular
localization
wolf
nucl 5,  cyto 4,  E.R. 1,  cysk 1  (predict for NP_001325878.1)
nucl 6,  cyto 3,  nucl_plas 3  (predict for NP_001325879.1)
nucl 7,  cyto 1,  chlo 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_190280.5)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_001325878.1)
other 7,  chlo 3  (predict for NP_001325879.1)
other 7  (predict for NP_190280.5)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G46960 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.2 PKL chromatin remodeling factor CHD3 (PICKLE) [detail] 817055
6.8 SCC3 sister-chromatid cohesion protein 3 [detail] 819410
6.8 AT3G19740 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 821511
5.5 CSTF77 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 838354
4.7 CHR18 chromatin remodeling factor18 [detail] 841251
Coexpressed
gene list		 [Coexpressed gene list for AT3G46960]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252443_at
252443_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252443_at
252443_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252443_at
252443_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823849      
Refseq ID (protein) NP_001325878.1 
NP_001325879.1 
NP_190280.5 


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