ATTED-II : GeneID search result

[←][→] ath AT3G48540 Gene

functional annotation

Function

Cytidine/deoxycytidylate deaminase family protein

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5095 genes)

ISM

GO MF

GO:0008270 [list] [network] zinc ion binding	(554 genes)	IEA
GO:0016787 [list] [network] hydrolase activity	(3024 genes)	IEA

KEGG

ath00240 [list] [network] Pyrimidine metabolism (57 genes)

Protein

NP_190423.2

BLAST

NP_190423.2

Orthologous

[Ortholog page] LOC4326895 (osa) LOC7463128 (ppo) LOC7484473 (ppo) LOC11409501 (mtr) LOC100261131 (vvi) LOC100285892 (zma) LOC100792003 (gma) LOC101262504 (sly) LOC103874707 (bra)

Subcellular
localization
wolf

chlo 8, extr 2

(predict for NP_190423.2)

Subcellular
localization
TargetP

scret 4, chlo 3

(predict for NP_190423.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	7
ath03420	Nucleotide excision repair	4
ath03430	Mismatch repair	4
ath03440	Homologous recombination	4
ath03410	Base excision repair	2

Genes directly connected with AT3G48540 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.6	PCNA1	proliferating cellular nuclear antigen 1	[detail]	837249
8.3	AT1G20720	RAD3-like DNA-binding helicase protein	[detail]	838662
7.7	SYN3	Rad21/Rec8-like family protein	[detail]	825124

Coexpressed
gene list

[Coexpressed gene list for AT3G48540]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252369_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252369_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252369_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824013
Refseq ID (protein)	NP_190423.2

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