[←][→] ath   AT3G49580 Gene
functional annotation
Function   response to low sulfur 1  
GO BP
GO:0010438 [list] [network] cellular response to sulfur starvation  (9 genes)  IEP  
GO:0098869 [list] [network] cellular oxidant detoxification  (26 genes)  IEA  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG
Protein NP_001190042.1  NP_001327932.1  NP_190527.1 
BLAST NP_001190042.1  NP_001327932.1  NP_190527.1 
Orthologous [Ortholog page] LSU3 (ath)  LSU4 (ath)  LSU2 (ath)  LOC4328185 (osa)  LOC4349083 (osa)  LOC7464483 (ppo)  LOC7486705 (ppo)  LOC9269286 (osa)  LOC11424580 (mtr)  LOC100267499 (vvi)  LOC100274353 (zma)  LOC100274648 (zma)  LOC100804573 (gma)  LOC100813653 (gma)  LOC100820369 (gma)  LOC101243684 (sly)  LOC101243970 (sly)  LOC101259547 (sly)  LOC101268660 (sly)  LOC103854791 (bra)  LOC103873047 (bra)  LOC103873048 (bra)  LOC103874333 (bra)  LOC109943750 (zma) 
Subcellular
localization
wolf
chlo 6,  nucl 2,  cyto 1,  plas 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001190042.1)
chlo 6,  cyto 4  (predict for NP_001327932.1)
chlo 8,  nucl 1,  plas 1,  pero 1,  nucl_plas 1  (predict for NP_190527.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001190042.1)
other 7  (predict for NP_001327932.1)
other 7  (predict for NP_190527.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00920 Sulfur metabolism 4
ath00270 Cysteine and methionine metabolism 2
ath01200 Carbon metabolism 2
ath01230 Biosynthesis of amino acids 2
ath00260 Glycine, serine and threonine metabolism 2
Genes directly connected with LSU1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
20.5 LSU3 response to low sulfur 3 [detail] 824119
20.3 ATSDI1 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 834943
14.0 SHM7 serine hydroxymethyltransferase 7 [detail] 840543
12.7 LSU2 response to low sulfur 2 [detail] 832538
9.9 PYD4 PYRIMIDINE 4 [detail] 820034
9.4 BGLU28 beta glucosidase 28 [detail] 819053
5.4 SR1 serine/threonine protein kinase 1 [detail] 831765
5.3 LSU4 response to low sulfur 4 [detail] 832537
5.2 BCA3 beta carbonic anhydrase 3 [detail] 838983
Coexpressed
gene list		 [Coexpressed gene list for LSU1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252269_at
252269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252269_at
252269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252269_at
252269_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824120      
Refseq ID (protein) NP_001190042.1 
NP_001327932.1 
NP_190527.1 


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