[←][→] ath   AT3G50670 Gene
functional annotation
Function   U1 small nuclear ribonucleoprotein-70K  
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA IDA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (17 genes)  IBA  
GO:0071004 [list] [network] U2-type prespliceosome  (24 genes)  IBA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0030619 [list] [network] U1 snRNA binding  (6 genes)  IBA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_190636.1  NP_850676.1 
BLAST NP_190636.1  NP_850676.1 
Orthologous [Ortholog page] LOC542179 (zma)  LOC4347985 (osa)  LOC7473166 (ppo)  LOC11405190 (mtr)  LOC100244445 (vvi)  LOC100800903 (gma)  LOC100814484 (gma)  LOC101254653 (sly)  LOC103837710 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_190636.1)
nucl 4,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_850676.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for NP_190636.1)
chlo 5,  other 4  (predict for NP_850676.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
Genes directly connected with U1-70K on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.1 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 829822
9.4 AT4G36980 CLK4-associating serine/arginine-rich protein [detail] 829852
9.4 AT1G60200 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [detail] 842315
9.3 AT1G15200 protein-protein interaction regulator family protein [detail] 838086
8.5 RS41 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 835279
7.9 SR34 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 839262
7.0 AT5G22040 ubiquitin carboxyl-terminal hydrolase [detail] 832265
6.1 AT1G08125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 2745748
Coexpressed
gene list		 [Coexpressed gene list for U1-70K]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252182_at
252182_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252182_at
252182_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252182_at
252182_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824230      
Refseq ID (protein) NP_190636.1 
NP_850676.1 


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