[←][→] ath   AT3G50880 Gene
functional annotation
Function   DNA glycosylase superfamily protein  
GO BP
GO:0006307 [list] [network] DNA dealkylation involved in DNA repair  (2 genes)  IBA  
GO:0006285 [list] [network] base-excision repair, AP site formation  (5 genes)  IBA  
GO CC
GO:0032993 [list] [network] protein-DNA complex  (76 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0032131 [list] [network] alkylated DNA binding  (1 genes)  IBA  
GO:0043916 [list] [network] DNA-7-methylguanine glycosylase activity  (2 genes)  IBA  
GO:0008725 [list] [network] DNA-3-methyladenine glycosylase activity  (8 genes)  IBA  
KEGG ath03410 [list] [network] Base excision repair (43 genes)
Protein NP_190657.1 
BLAST NP_190657.1 
Orthologous [Ortholog page] AT1G19480 (ath)  AT1G75230 (ath)  LOC4339642 (osa)  LOC4339711 (osa)  LOC11416684 (mtr)  LOC25490192 (mtr)  LOC100194229 (zma)  LOC100243712 (vvi)  LOC100252980 (vvi)  LOC100274123 (zma)  LOC100285587 (zma)  LOC100788160 (gma)  LOC100790760 (gma)  LOC100852509 (vvi)  LOC101265434 (sly)  LOC101266297 (sly)  LOC103830656 (bra)  LOC103841008 (bra)  LOC103854075 (bra)  LOC103872750 (bra) 
Subcellular
localization
wolf
mito 3,  chlo 2,  cyto_nucl 2,  nucl 1,  cyto 1,  extr 1,  pero 1  (predict for NP_190657.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_190657.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03022 Basal transcription factors 2
Genes directly connected with AT3G50880 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.8 AT2G44530 Phosphoribosyltransferase family protein [detail] 819061
4.7 TBP1 TATA binding protein 1 [detail] 820546
4.7 PHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein [detail] 835531
Coexpressed
gene list		 [Coexpressed gene list for AT3G50880]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252154_at
252154_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252154_at
252154_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252154_at
252154_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824252      
Refseq ID (protein) NP_190657.1 


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