[←][→] ath   AT3G51880 Gene
functional annotation
Function   high mobility group B1  
GO BP
GO:0006333 [list] [network] chromatin assembly or disassembly  (52 genes)  TAS  
GO CC
GO:0000785 [list] [network] chromatin  (160 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0030527 [list] [network] structural constituent of chromatin  (5 genes)  TAS  
GO:0003682 [list] [network] chromatin binding  (126 genes)  TAS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IDA ISS  
KEGG ath03410 [list] [network] Base excision repair (43 genes)
Protein NP_001078269.1  NP_001190062.1  NP_001327501.1  NP_190756.1  NP_974413.1 
BLAST NP_001078269.1  NP_001190062.1  NP_001327501.1  NP_190756.1  NP_974413.1 
Orthologous [Ortholog page] LOC7474442 (ppo)  LOC11405962 (mtr)  LOC100246802 (vvi)  LOC100256381 (vvi)  LOC100305961 (gma)  LOC100499704 (gma)  LOC101247954 (sly)  LOC103841127 (bra)  LOC103860732 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001078269.1)
nucl 10  (predict for NP_001190062.1)
nucl 10  (predict for NP_001327501.1)
nucl 10  (predict for NP_190756.1)
nucl 10  (predict for NP_974413.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001078269.1)
other 9  (predict for NP_001190062.1)
other 9  (predict for NP_001327501.1)
other 9  (predict for NP_190756.1)
other 9  (predict for NP_974413.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with HMGB1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 AT5G22080 Chaperone DnaJ-domain superfamily protein [detail] 832269
6.5 PEX19-2 peroxin 19-2 [detail] 831621
6.5 AT1G16810 7-dehydrocholesterol reductase-like protein [detail] 838252
Coexpressed
gene list		 [Coexpressed gene list for HMGB1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246311_at
246311_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246311_at
246311_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246311_at
246311_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824351      
Refseq ID (protein) NP_001078269.1 
NP_001190062.1 
NP_001327501.1 
NP_190756.1 
NP_974413.1 


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