[←][→] ath   AT3G52260 Gene
functional annotation
Function   Pseudouridine synthase family protein  
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (21 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (20 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG
Protein NP_001190071.1  NP_001326754.1  NP_190794.2  NP_974416.1 
BLAST NP_001190071.1  NP_001326754.1  NP_190794.2  NP_974416.1 
Orthologous [Ortholog page] LOC4332490 (osa)  LOC7457877 (ppo)  LOC11409136 (mtr)  LOC100265032 (vvi)  LOC100272393 (zma)  LOC100810058 (gma)  LOC101246017 (sly)  LOC103860749 (bra) 
Subcellular
localization
wolf
chlo 4,  nucl 1,  mito 1,  cysk_nucl 1,  cyto 1,  plas 1,  vacu 1,  cyto_mito 1,  cyto_plas 1  (predict for NP_001190071.1)
cyto 4,  chlo 3,  nucl 3  (predict for NP_001326754.1)
cyto 5,  chlo 2,  nucl 1,  mito 1,  plas 1,  pero 1,  nucl_plas 1,  mito_plas 1  (predict for NP_190794.2)
cyto 5,  nucl 4,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_974416.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190071.1)
other 8  (predict for NP_001326754.1)
other 8  (predict for NP_190794.2)
other 8  (predict for NP_974416.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G52260 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.7 AT3G02280 Flavodoxin family protein [detail] 820417
7.5 AT1G78910 Pseudouridine synthase family protein [detail] 844229
6.8 KDTA KDO transferase A [detail] 831727
6.2 AT5G06180 fission ELM1-like protein (DUF1022) [detail] 830505
6.0 AT2G46200 U11/U12 small nuclear ribonucleoprotein [detail] 819227
5.3 AT2G42640 Mitogen activated protein kinase kinase kinase-like protein [detail] 818864
5.2 AT2G04940 scramblase-like protein [detail] 815041
5.1 RECQL2 RECQ helicase L2 [detail] 840026
Coexpressed
gene list		 [Coexpressed gene list for AT3G52260]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256700_at
256700_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256700_at
256700_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256700_at
256700_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824391      
Refseq ID (protein) NP_001190071.1 
NP_001326754.1 
NP_190794.2 
NP_974416.1 


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