[←][→] ath   AT3G53500 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  TAS  
GO:0008380 [list] [network] RNA splicing  (272 genes)  NAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001326575.1  NP_190918.3  NP_851015.1 
BLAST NP_001326575.1  NP_190918.3  NP_851015.1 
Orthologous [Ortholog page] RS2Z33 (ath)  LOC4324080 (osa)  LOC4332476 (osa)  LOC4337644 (osa)  LOC100193414 (zma)  LOC100251921 (vvi)  LOC100258584 (vvi)  LOC100272956 (zma)  LOC100276428 (zma)  LOC100382130 (zma)  LOC100789337 (gma)  LOC100789862 (gma)  LOC100812698 (gma)  LOC100813237 (gma)  LOC101253688 (sly)  LOC101266446 (sly)  LOC103829935 (bra)  LOC103841273 (bra)  LOC103857675 (bra)  LOC112416407 (mtr) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001326575.1)
nucl 10  (predict for NP_190918.3)
nucl 9  (predict for NP_851015.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001326575.1)
mito 8,  other 4  (predict for NP_190918.3)
other 8  (predict for NP_851015.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
Genes directly connected with RS2Z32 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.6 SC35 serine/arginine-rich splicing factor-like protein, putative [detail] 836541
9.7 AtRZ-1c RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 830307
8.9 SCL30A SC35-like splicing factor 30A [detail] 820559
7.9 RS41 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 835279
6.7 PTB2 polypyrimidine tract-binding protein 2 [detail] 835399
5.9 RBP45B RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 837708
Coexpressed
gene list		 [Coexpressed gene list for RS2Z32]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251943_at
251943_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251943_at
251943_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251943_at
251943_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824518      
Refseq ID (protein) NP_001326575.1 
NP_190918.3 
NP_851015.1 


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