[←][→] ath   AT3G54640 Gene
functional annotation
Function   tryptophan synthase alpha chain  
GO BP
GO:0052544 [list] [network] defense response by callose deposition in cell wall  (16 genes)  IMP  
GO:0000162 [list] [network] tryptophan biosynthetic process  (22 genes)  IBA IDA IEA TAS  
GO:0009851 [list] [network] auxin biosynthetic process  (44 genes)  IEA  
GO:0009630 [list] [network] gravitropism  (90 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  HDA IBA IDA ISM  
GO MF
GO:0033984 [list] [network] indole-3-glycerol-phosphate lyase activity  (2 genes)  IEA  
GO:0004834 [list] [network] tryptophan synthase activity  (6 genes)  IBA IDA IGI  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (56 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_567004.1 
BLAST NP_567004.1 
Orthologous [Ortholog page] LOC541855 (zma)  TSA (gma)  AT4G02610 (ath)  LOC4334425 (osa)  LOC4334427 (osa)  LOC7472004 (ppo)  LOC9268807 (osa)  LOC9270552 (osa)  LOC25499196 (mtr)  LOC25499341 (mtr)  LOC100170238 (zma)  LOC100252844 (vvi)  LOC100273163 (zma)  LOC100808400 (gma)  LOC101255433 (sly)  LOC103644181 (zma)  LOC103644182 (zma)  LOC103836728 (bra)  LOC103841367 (bra) 
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 1  (predict for NP_567004.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_567004.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 10
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00260 Glycine, serine and threonine metabolism 5
ath00270 Cysteine and methionine metabolism 2
ath01200 Carbon metabolism 2
Genes directly connected with TSA1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
17.0 AT2G04400 Aldolase-type TIM barrel family protein [detail] 814980
15.9 YLS5 Class I glutamine amidotransferase-like superfamily protein [detail] 818470
12.7 ASA1 anthranilate synthase alpha subunit 1 [detail] 830457
12.6 TRP1 tryptophan biosynthesis 1 [detail] 831666
10.7 TSB1 tryptophan synthase beta-subunit 1 [detail] 835571
10.4 PSAT phosphoserine aminotransferase [detail] 829715
9.5 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 [detail] 830159
8.2 ASB1 anthranilate synthase beta subunit 1 [detail] 839103
8.2 LAP1 Cytosol aminopeptidase family protein [detail] 816954
7.6 AIG2 AIG2-like (avirulence induced gene) family protein [detail] 822529
6.8 TSB2 tryptophan synthase beta-subunit 2 [detail] 828815
3.8 AT2G03505 Carbohydrate-binding X8 domain superfamily protein [detail] 814879
Coexpressed
gene list		 [Coexpressed gene list for TSA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251847_at
251847_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251847_at
251847_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251847_at
251847_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824629      
Refseq ID (protein) NP_567004.1 


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