ATTED-II : GeneID search result

[←][→] ath AT4G27490 Gene

functional annotation

Function

3'-5'-exoribonuclease family protein

GO BP

GO:0071051 [list] [network] polyadenylation-dependent snoRNA 3'-end processing	(7 genes)	IBA
GO:0034475 [list] [network] U4 snRNA 3'-end processing	(10 genes)	IBA
GO:0034427 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	(12 genes)	IBA
GO:0071028 [list] [network] nuclear mRNA surveillance	(14 genes)	IBA
GO:0016075 [list] [network] rRNA catabolic process	(17 genes)	IBA
GO:0009845 [list] [network] seed germination	(93 genes)	IMP
GO:0090351 [list] [network] seedling development	(115 genes)	IMP
GO:0006364 [list] [network] rRNA processing	(276 genes)	IEA

GO CC

GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)	(12 genes)	IBA
GO:0000176 [list] [network] nuclear exosome (RNase complex)	(13 genes)	IBA
GO:0005730 [list] [network] nucleolus	(477 genes)	IBA
GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IDA

GO MF

GO:0008408 [list] [network] 3'-5' exonuclease activity	(65 genes)	IMP
GO:0003723 [list] [network] RNA binding	(1790 genes)	IEA

KEGG

ath03018 [list] [network] RNA degradation (113 genes)

Protein

NP_001320075.1 NP_001328238.1 NP_001328239.1 NP_001328240.1 NP_001328241.1 NP_001328242.1 NP_001328243.1

BLAST

NP_001320075.1 NP_001328238.1 NP_001328239.1 NP_001328240.1 NP_001328241.1 NP_001328242.1 NP_001328243.1

Orthologous

[Ortholog page] LOC4344519 (osa) LOC7491150 (ppo) LOC9269241 (osa) LOC11410037 (mtr) LOC100251840 (vvi) LOC100382718 (zma) LOC100816271 (gma) LOC100819105 (gma) LOC101260939 (sly) LOC103867212 (bra)

Subcellular
localization
wolf

chlo 7, nucl 1, mito 1, extr 1, E.R. 1	(predict for NP_001320075.1)
chlo 7, nucl 1, mito 1, extr 1, E.R. 1	(predict for NP_001328238.1)
chlo 7, plas 1, mito 1, extr 1, nucl_plas 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1	(predict for NP_001328239.1)
chlo 7, plas 1, mito 1, extr 1, nucl_plas 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1	(predict for NP_001328240.1)
chlo 7, nucl 1, mito 1, extr 1, E.R. 1	(predict for NP_001328241.1)
chlo 4, E.R. 3, nucl 1, cyto_E.R. 1	(predict for NP_001328242.1)
chlo 7, plas 1, mito 1, extr 1, nucl_plas 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1	(predict for NP_001328243.1)

Subcellular
localization
TargetP

other 4, chlo 4	(predict for NP_001320075.1)
other 4, chlo 4	(predict for NP_001328238.1)
other 4, chlo 4	(predict for NP_001328239.1)
other 4, chlo 4	(predict for NP_001328240.1)
other 4, chlo 4	(predict for NP_001328241.1)
scret 4	(predict for NP_001328242.1)
other 4, chlo 4	(predict for NP_001328243.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	5

Genes directly connected with RRP41L on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.8	AT5G15550	Transducin/WD40 repeat-like superfamily protein	[detail]	831408
7.3	AT3G07750	3'-5'-exoribonuclease family protein	[detail]	819966
6.7	AT2G25355	PNAS-3-like protein	[detail]	817074

Coexpressed
gene list

[Coexpressed gene list for RRP41L]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

253867_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

253867_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

253867_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	828858
Refseq ID (protein)	NP_001320075.1
	NP_001328238.1
	NP_001328239.1
	NP_001328240.1
	NP_001328241.1
	NP_001328242.1
	NP_001328243.1

The preparation time of this page was 0.3 [sec].