[←][→] ath   AT4G29380 Gene
functional annotation
Function   protein kinase family protein / WD-40 repeat family protein  
GO BP
GO:0030242 [list] [network] autophagy of peroxisome  (3 genes)  IBA  
GO:0048015 [list] [network] phosphatidylinositol-mediated signaling  (16 genes)  IMP  
GO:0016236 [list] [network] macroautophagy  (25 genes)  IBA  
GO:0045324 [list] [network] late endosome to vacuole transport  (27 genes)  IBA  
GO:0006623 [list] [network] protein targeting to vacuole  (36 genes)  IBA  
GO:0009846 [list] [network] pollen germination  (67 genes)  IMP  
GO:0009555 [list] [network] pollen development  (337 genes)  IMP  
GO:0006468 [list] [network] protein phosphorylation  (921 genes)  IBA  
GO CC
GO:0071561 [list] [network] nucleus-vacuole junction  (1 genes)  IBA  
GO:0034271 [list] [network] phosphatidylinositol 3-kinase complex, class III, type I  (3 genes)  IBA  
GO:0034272 [list] [network] phosphatidylinositol 3-kinase complex, class III, type II  (3 genes)  IBA  
GO:0005770 [list] [network] late endosome  (91 genes)  IBA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (130 genes)  ISS  
GO:0010008 [list] [network] endosome membrane  (162 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  IEA ISM  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0004674 [list] [network] protein serine/threonine kinase activity  (801 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04136 [list] [network] Autophagy - other (40 genes)
Protein NP_001329182.1  NP_194667.1 
BLAST NP_001329182.1  NP_194667.1 
Orthologous [Ortholog page] LOC4331010 (osa)  LOC7497628 (ppo)  LOC25496990 (mtr)  LOC100256057 (vvi)  LOC100796837 (gma)  LOC100818467 (gma)  LOC101248472 (sly)  LOC103627860 (zma)  LOC103654173 (zma)  LOC103853623 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  plas 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001329182.1)
nucl 5,  chlo 3,  cyto_nucl 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_194667.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_001329182.1)
other 7,  mito 4  (predict for NP_194667.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 4
Genes directly connected with VPS15 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.6 UPL4 ubiquitin-protein ligase 4 [detail] 831758
8.5 AT4G02480 AAA-type ATPase family protein [detail] 827979
7.5 AT1G17680 tetratricopeptide repeat (TPR)-containing protein [detail] 838344
7.1 AT4G30790 autophagy-like protein [detail] 829202
7.0 AT3G49490 hypothetical protein [detail] 824111
6.3 RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) [detail] 834509
Coexpressed
gene list		 [Coexpressed gene list for VPS15]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253714_at
253714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253714_at
253714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253714_at
253714_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829059      
Refseq ID (protein) NP_001329182.1 
NP_194667.1 


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