[←][→] ath   AT4G34650 Gene
functional annotation
Function   squalene synthase 2  
GO BP
GO:0006696 [list] [network] ergosterol biosynthetic process  (4 genes)  IEA  
GO:0045338 [list] [network] farnesyl diphosphate metabolic process  (20 genes)  IBA  
GO:0016126 [list] [network] sterol biosynthetic process  (37 genes)  ISS  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (466 genes)  IBA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO MF
GO:0004310 [list] [network] farnesyl-diphosphate farnesyltransferase activity  (3 genes)  IBA IDA IGI ISS  
GO:0051996 [list] [network] squalene synthase activity  (3 genes)  IBA IDA  
KEGG ath00100 [list] [network] Steroid biosynthesis (35 genes)
ath00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (23 genes)
Protein NP_001328690.1  NP_195191.2 
BLAST NP_001328690.1  NP_195191.2 
Orthologous [Ortholog page] LOC541614 (zma)  LOC547940 (gma)  SQS1 (ath)  LOC4334492 (osa)  LOC4342663 (osa)  LOC7461247 (ppo)  LOC7494303 (ppo)  LOC11441556 (mtr)  LOC100191601 (zma)  LOC100265798 (vvi)  SQS1 (sly)  LOC100775983 (gma)  SQS2 (sly)  LOC103834400 (bra)  LOC103836007 (bra)  LOC103836099 (bra)  LOC103862364 (bra) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  plas 1,  vacu 1,  pero 1  (predict for NP_001328690.1)
cyto 4,  chlo 3,  vacu 1,  chlo_mito 1  (predict for NP_195191.2)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_001328690.1)
other 7  (predict for NP_195191.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 3
ath00460 Cyanoamino acid metabolism 2
ath00500 Starch and sucrose metabolism 2
Genes directly connected with SQS2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.7 BGLU6 beta glucosidase 6 [detail] 3767579
5.1 SNZ Integrase-type DNA-binding superfamily protein [detail] 818510
4.8 AT5G45950 GDSL-like Lipase/Acylhydrolase superfamily protein [detail] 834635
Coexpressed
gene list		 [Coexpressed gene list for SQS2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253254_at
253254_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253254_at
253254_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253254_at
253254_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829617      
Refseq ID (protein) NP_001328690.1 
NP_195191.2 


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