| functional annotation |
| Function |
Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein |
|
| GO BP |
|
GO:0048577 [list] [network] negative regulation of short-day photoperiodism, flowering
|
(6 genes)
|
IMP
|
 |
|
GO:0033169 [list] [network] histone H3-K9 demethylation
|
(7 genes)
|
IMP
|
|
|
GO:0048579 [list] [network] negative regulation of long-day photoperiodism, flowering
|
(12 genes)
|
IMP
|
|
|
GO:0006338 [list] [network] chromatin remodeling
|
(51 genes)
|
IBA
|
|
|
GO:0009741 [list] [network] response to brassinosteroid
|
(109 genes)
|
IMP
|
|
|
GO:0009826 [list] [network] unidimensional cell growth
|
(279 genes)
|
IMP
|
|
|
GO:0055114 [list] [network] oxidation-reduction process
|
(1468 genes)
|
IEA
|
|
|
GO:0006355 [list] [network] regulation of transcription, DNA-templated
|
(1984 genes)
|
TAS
|
|
|
| GO CC |
|
| GO MF |
|
GO:0034647 [list] [network] histone demethylase activity (H3-trimethyl-K4 specific)
|
(8 genes)
|
IBA
|
|
|
GO:0032452 [list] [network] histone demethylase activity
|
(14 genes)
|
IBA
|
|
|
GO:0051213 [list] [network] dioxygenase activity
|
(147 genes)
|
IEA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
GO:0003676 [list] [network] nucleic acid binding
|
(4187 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_196044.2
|
| BLAST |
NP_196044.2
|
| Orthologous |
[Ortholog page]
LOC9268736 (osa)
LOC11420302 (mtr)
LOC100256547 (vvi)
LOC100381553 (zma)
LOC100799861 (gma)
LOC100819845 (gma)
LOC101266411 (sly)
LOC103644430 (zma)
LOC103847317 (bra)
|
Subcellular
localization
wolf |
|
chlo 4,
nucl 2,
chlo_mito 2,
cysk_nucl 1
|
(predict for NP_196044.2)
|
|
Subcellular
localization
TargetP |
|
other 7
|
(predict for NP_196044.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath03040 |
Spliceosome |
3 |
 |
Genes directly connected with ELF6 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 7.8 |
AT5G53440 |
LOW protein: zinc finger CCCH domain protein |
[detail] |
835425 |
| 7.7 |
AT3G21290 |
dentin sialophosphoprotein-like protein |
[detail] |
821683 |
| 7.6 |
AT5G64270 |
splicing factor |
[detail] |
836548 |
| 7.1 |
FHY3 |
far-red elongated hypocotyls 3 |
[detail] |
821781 |
| 6.1 |
AT3G12640 |
RNA binding (RRM/RBD/RNP motifs) family protein |
[detail] |
820444 |
| 5.1 |
AT3G46920 |
kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein |
[detail] |
823845 |
|
Coexpressed
gene list |
[Coexpressed gene list for ELF6]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
245691_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
245691_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
245691_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT5G04240 Gene
