[←][→] ath   AT5G16630 Gene
functional annotation
Function   DNA repair protein Rad4 family  
GO BP
GO:0006298 [list] [network] mismatch repair  (14 genes)  IBA  
GO:0006289 [list] [network] nucleotide-excision repair  (46 genes)  IBA  
GO CC
GO:0000111 [list] [network] nucleotide-excision repair factor 2 complex  (1 genes)  IBA  
GO:0071942 [list] [network] XPC complex  (1 genes)  IBA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (40 genes)  IBA  
GO:0003697 [list] [network] single-stranded DNA binding  (75 genes)  IBA  
KEGG ath03420 [list] [network] Nucleotide excision repair (69 genes)
Protein NP_001031894.1  NP_001332636.1  NP_197166.2 
BLAST NP_001031894.1  NP_001332636.1  NP_197166.2 
Orthologous [Ortholog page] LOC4345619 (osa)  LOC7487392 (ppo)  LOC11436447 (mtr)  LOC100265647 (vvi)  LOC100818100 (gma)  LOC101265989 (sly)  LOC103645297 (zma)  LOC103851059 (bra) 
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  nucl 1,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001031894.1)
chlo 6,  chlo_mito 4,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001332636.1)
chlo 6,  chlo_mito 4,  nucl 1,  mito 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_197166.2)
Subcellular
localization
TargetP
chlo 4,  mito 3  (predict for NP_001031894.1)
chlo 4,  mito 3  (predict for NP_001332636.1)
chlo 4,  mito 3  (predict for NP_197166.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
Genes directly connected with RAD4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.4 EMB3011 RNA helicase family protein [detail] 831141
5.4 TGH SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [detail] 832372
5.3 AT1G17680 tetratricopeptide repeat (TPR)-containing protein [detail] 838344
Coexpressed
gene list		 [Coexpressed gene list for RAD4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250105_at
250105_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250105_at
250105_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250105_at
250105_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831525      
Refseq ID (protein) NP_001031894.1 
NP_001332636.1 
NP_197166.2 


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