[←][→] ath   AT5G23670 Gene
functional annotation
Function   long chain base2  
GO BP
GO:0046512 [list] [network] sphingosine biosynthetic process  (4 genes)  IDA  
GO:0043067 [list] [network] regulation of programmed cell death  (62 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (71 genes)  IMP  
GO:0009555 [list] [network] pollen development  (337 genes)  IMP  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (466 genes)  IEA  
GO:0005783 [list] [network] endoplasmic reticulum  (877 genes)  IDA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0016020 [list] [network] membrane  (7839 genes)  IDA  
GO MF
GO:0004758 [list] [network] serine C-palmitoyltransferase activity  (3 genes)  IDA IGI  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00600 [list] [network] Sphingolipid metabolism (27 genes)
Protein NP_001031932.1  NP_197756.1 
BLAST NP_001031932.1  NP_197756.1 
Orthologous [Ortholog page] LOC732780 (zma)  SPT1 (ath)  LOC4326964 (osa)  LOC4326965 (osa)  LOC4326966 (osa)  LOC4350591 (osa)  LOC7454589 (ppo)  LOC7486392 (ppo)  LOC25495905 (mtr)  LOC100249169 (vvi)  LOC100249818 (vvi)  LOC100282573 (zma)  LOC100285632 (zma)  LOC100789635 (gma)  LOC100803194 (gma)  LOC101246439 (sly)  LOC101254177 (sly)  LOC103652945 (zma)  LCB2 (bra)  LOC103874866 (bra) 
Subcellular
localization
wolf
extr 3,  chlo 1,  vacu 1,  E.R. 1,  golg 1,  E.R._vacu 1  (predict for NP_001031932.1)
extr 3,  chlo 1,  vacu 1,  E.R. 1,  golg 1,  E.R._vacu 1  (predict for NP_197756.1)
Subcellular
localization
TargetP
scret 7  (predict for NP_001031932.1)
scret 7  (predict for NP_197756.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with LCB2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 ATR1 P450 reductase 1 [detail] 828554
7.0 AT4G36440 G-protein coupled receptor [detail] 829796
6.8 QSOX1 quiescin-sulfhydryl oxidase 1 [detail] 838067
4.6 AT3G06440 Galactosyltransferase family protein [detail] 819820
Coexpressed
gene list		 [Coexpressed gene list for LCB2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249799_at
249799_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249799_at
249799_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249799_at
249799_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832432      
Refseq ID (protein) NP_001031932.1 
NP_197756.1 


The preparation time of this page was 0.2 [sec].