[←][→] ath   AT5G51940 Gene
functional annotation
Function   RNA polymerase Rpb6  
GO BP
GO CC
GO:0000418 [list] [network] RNA polymerase IV complex  (15 genes)  IDA IPI  
GO:0005736 [list] [network] RNA polymerase I complex  (17 genes)  IBA  
GO:0000419 [list] [network] RNA polymerase V complex  (21 genes)  IDA IPI  
GO:0005665 [list] [network] RNA polymerase II, core complex  (22 genes)  IBA IDA IPI  
GO:0005666 [list] [network] RNA polymerase III complex  (23 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0001055 [list] [network] RNA polymerase II activity  (19 genes)  IBA  
GO:0001054 [list] [network] RNA polymerase I activity  (20 genes)  IBA  
GO:0001056 [list] [network] RNA polymerase III activity  (24 genes)  IBA  
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity  (59 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG ath03020 [list] [network] RNA polymerase (45 genes)
Protein NP_200007.1 
BLAST NP_200007.1 
Orthologous [Ortholog page] NRPB6B (ath)  LOC4333343 (osa)  LOC4343168 (osa)  LOC7474023 (ppo)  LOC7484401 (ppo)  LOC25479674 (mtr)  LOC100243758 (vvi)  LOC100253791 (vvi)  LOC100282532 (zma)  LOC100283558 (zma)  LOC100305739 (gma)  LOC100794926 (gma)  LOC101259186 (sly)  LOC103837016 (bra)  LOC103863944 (bra) 
Subcellular
localization
wolf
nucl 4,  extr 3,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_200007.1)
Subcellular
localization
TargetP
other 8  (predict for NP_200007.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
Genes directly connected with NRPB6A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.9 AT1G16810 7-dehydrocholesterol reductase-like protein [detail] 838252
8.3 NRPB6B RNA polymerase Rpb6 [detail] 815006
7.6 AIP3 ABI3-interacting protein 3 [detail] 837400
7.2 AT2G45520 coiled-coil protein [detail] 819160
6.9 CBP20 CAP-binding protein 20 [detail] 834443
6.9 AT3G05070 Cwf18 pre-mRNA splicing factor [detail] 819669
6.7 AT5G46030 transcription elongation factor-like protein [detail] 834644
5.9 NF-YB1 nuclear factor Y, subunit B1 [detail] 818472
Coexpressed
gene list		 [Coexpressed gene list for NRPB6A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248386_at
248386_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248386_at
248386_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248386_at
248386_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835269      
Refseq ID (protein) NP_200007.1 


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