[←][→] ath   AT5G55300 Gene
functional annotation
Function   DNA topoisomerase I alpha  
GO BP
GO:0048439 [list] [network] flower morphogenesis  (5 genes)  IMP  
GO:0006265 [list] [network] DNA topological change  (10 genes)  ISS  
GO:0006338 [list] [network] chromatin remodeling  (51 genes)  IGI  
GO:0009933 [list] [network] meristem structural organization  (54 genes)  IMP  
GO:0010075 [list] [network] regulation of meristem growth  (54 genes)  IMP  
GO:0019827 [list] [network] stem cell population maintenance  (54 genes)  IGI  
GO:0009965 [list] [network] leaf morphogenesis  (96 genes)  IMP  
GO:1905393 [list] [network] plant organ formation  (114 genes)  IMP  
GO:0010016 [list] [network] shoot system morphogenesis  (172 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  IMP  
GO:0009791 [list] [network] post-embryonic development  (1519 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (4 genes)  IGI  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001190543.1  NP_001190544.1  NP_200341.1 
BLAST NP_001190543.1  NP_001190544.1  NP_200341.1 
Orthologous [Ortholog page] TOP1BETA (ath)  LOC4344685 (osa)  LOC7470821 (ppo)  LOC25480542 (mtr)  LOC25482881 (mtr)  LOC100191474 (zma)  LOC100244754 (vvi)  LOC100246144 (vvi)  LOC100779575 (gma)  LOC100799837 (gma)  LOC101261043 (sly)  LOC103844971 (bra)  LOC103851889 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001190543.1)
nucl 9,  cyto_nucl 5  (predict for NP_001190544.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_200341.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001190543.1)
other 8,  chlo 3  (predict for NP_001190544.1)
other 8,  chlo 3  (predict for NP_200341.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
Genes directly connected with TOP1ALPHA on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.3 TOP1BETA DNA topoisomerase 1 beta [detail] 835624
9.2 ESP3 RNA helicase family protein [detail] 840143
8.4 DOT2 SART-1 family [detail] 831541
7.0 AT1G17680 tetratricopeptide repeat (TPR)-containing protein [detail] 838344
4.2 ATM2 myosin 2 [detail] 835516
Coexpressed
gene list		 [Coexpressed gene list for TOP1ALPHA]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248099_at
248099_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248099_at
248099_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248099_at
248099_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835623      
Refseq ID (protein) NP_001190543.1 
NP_001190544.1 
NP_200341.1 


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