[←][→] ath   AT5G55310 Gene
functional annotation
Function   DNA topoisomerase 1 beta  
GO BP
GO:0006265 [list] [network] DNA topological change  (10 genes)  IBA IC  
GO:0006338 [list] [network] chromatin remodeling  (51 genes)  IBA  
GO:0007059 [list] [network] chromosome segregation  (108 genes)  IBA  
GO:0006260 [list] [network] DNA replication  (120 genes)  IBA  
GO CC
GO:0031298 [list] [network] replication fork protection complex  (4 genes)  IBA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (4 genes)  IBA ISS  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG
Protein NP_200342.1 
BLAST NP_200342.1 
Orthologous [Ortholog page] TOP1ALPHA (ath)  LOC4344685 (osa)  LOC7470821 (ppo)  LOC25480542 (mtr)  LOC25482881 (mtr)  LOC100191474 (zma)  LOC100244754 (vvi)  LOC100246144 (vvi)  LOC100779575 (gma)  LOC100799837 (gma)  LOC101261043 (sly)  LOC103844971 (bra)  LOC103851889 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_200342.1)
Subcellular
localization
TargetP
other 9  (predict for NP_200342.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 RNA transport 3
Genes directly connected with TOP1BETA on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.3 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein [detail] 831529
9.3 TOP1ALPHA DNA topoisomerase I alpha [detail] 835623
8.4 emb1579 ATP/GTP-binding protein family [detail] 814844
6.7 AT2G20320 DENN (AEX-3) domain-containing protein [detail] 816551
5.2 AT5G49580 Chaperone DnaJ-domain superfamily protein [detail] 835020
Coexpressed
gene list		 [Coexpressed gene list for TOP1BETA]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248109_at
248109_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248109_at
248109_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248109_at
248109_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835624      
Refseq ID (protein) NP_200342.1 


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