| functional annotation |
| Function |
COP9 signalosome 5A |
|
| GO BP |
|
GO:0010971 [list] [network] positive regulation of G2/M transition of mitotic cell cycle
|
(5 genes)
|
IMP
|
 |
|
GO:0010387 [list] [network] COP9 signalosome assembly
|
(6 genes)
|
IMP
|
|
|
GO:0000338 [list] [network] protein deneddylation
|
(11 genes)
|
IBA
IMP
TAS
|
|
|
GO:0010093 [list] [network] specification of floral organ identity
|
(13 genes)
|
IMP
|
|
|
GO:0010100 [list] [network] negative regulation of photomorphogenesis
|
(13 genes)
|
IGI
|
|
|
GO:0009585 [list] [network] red, far-red light phototransduction
|
(54 genes)
|
IEA
|
|
|
GO:0009640 [list] [network] photomorphogenesis
|
(71 genes)
|
TAS
|
|
|
GO:0031347 [list] [network] regulation of defense response
|
(260 genes)
|
IMP
|
|
|
GO:0009733 [list] [network] response to auxin
|
(407 genes)
|
IGI
|
|
|
| GO CC |
|
| GO MF |
|
GO:0019784 [list] [network] NEDD8-specific protease activity
|
(5 genes)
|
IBA
|
|
|
GO:0004222 [list] [network] metalloendopeptidase activity
|
(48 genes)
|
IEA
|
|
|
GO:0008237 [list] [network] metallopeptidase activity
|
(69 genes)
|
IBA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_173705.1
NP_973890.1
|
| BLAST |
NP_173705.1
NP_973890.1
|
| Orthologous |
[Ortholog page]
csn5 (sly)
CSN5B (ath)
LOC4337249 (osa)
LOC7458739 (ppo)
LOC11433036 (mtr)
LOC100265887 (vvi)
LOC100283276 (zma)
LOC100784909 (gma)
LOC100817371 (gma)
LOC101256005 (sly)
LOC103829303 (bra)
LOC103840816 (bra)
|
Subcellular
localization
wolf |
|
nucl 5,
cyto 3,
pero 1,
cyto_E.R. 1,
cyto_plas 1
|
(predict for NP_173705.1)
|
|
cyto 4,
nucl 3,
pero 3
|
(predict for NP_973890.1)
|
|
Subcellular
localization
TargetP |
|
other 9
|
(predict for NP_173705.1)
|
|
other 9
|
(predict for NP_973890.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath03018 |
RNA degradation |
3 |
 |
| ath03013 |
RNA transport |
2 |
 |
Genes directly connected with CSN5A on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 7.5 |
GTF2H2 |
general transcription factor II H2 |
[detail] |
839332 |
| 7.3 |
MSI1 |
Transducin/WD40 repeat-like superfamily protein |
[detail] |
835935 |
| 6.7 |
VIP3 |
Transducin/WD40 repeat-like superfamily protein |
[detail] |
829105 |
| 6.0 |
AT4G24880 |
snurportin-1 protein |
[detail] |
828590 |
| 4.6 |
AT1G11800 |
endonuclease/exonuclease/phosphatase family protein |
[detail] |
837726 |
|
Coexpressed
gene list |
[Coexpressed gene list for CSN5A]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
264724_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
264724_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
264724_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT1G22920 Gene
