[←][→] ath   AT1G27900 Gene
functional annotation
Function   RNA helicase family protein  
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001322409.1  NP_001322410.1  NP_564296.1 
BLAST NP_001322409.1  NP_001322410.1  NP_564296.1 
Orthologous [Ortholog page] LOC4350353 (osa)  LOC7477037 (ppo)  LOC25501723 (mtr)  LOC100245855 (vvi)  LOC100793583 (gma)  LOC101264721 (sly)  LOC103638000 (zma)  LOC103835367 (bra) 
Subcellular
localization
wolf
cyto 4,  nucl 3,  cyto_plas 3  (predict for NP_001322409.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001322410.1)
nucl 4,  chlo 2,  cyto 2,  plas 2,  cyto_plas 2  (predict for NP_564296.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for NP_001322409.1)
other 7,  chlo 4  (predict for NP_001322410.1)
other 7,  chlo 4  (predict for NP_564296.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03013 RNA transport 3
ath03040 Spliceosome 2
ath03420 Nucleotide excision repair 2
Genes directly connected with AT1G27900 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.7 AT5G26830 Threonyl-tRNA synthetase [detail] 832741
6.1 AT1G26170 ARM repeat superfamily protein [detail] 839158
6.0 AT1G71350 eukaryotic translation initiation factor SUI1 family protein [detail] 843476
5.6 UVH6 RAD3-like DNA-binding helicase protein [detail] 839557
Coexpressed
gene list		 [Coexpressed gene list for AT1G27900]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259597_at
259597_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259597_at
259597_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259597_at
259597_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839683      
Refseq ID (protein) NP_001322409.1 
NP_001322410.1 
NP_564296.1 


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