[←][→] ath   AT1G44910 Gene
functional annotation
Function   pre-mRNA-processing protein 40A  
GO BP
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IPI  
GO CC
GO:0005685 [list] [network] U1 snRNP  (17 genes)  IBA  
GO:0071004 [list] [network] U2-type prespliceosome  (24 genes)  IBA  
GO:0016592 [list] [network] mediator complex  (43 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0070063 [list] [network] RNA polymerase binding  (25 genes)  IPI  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001117438.1  NP_175113.2 
BLAST NP_001117438.1  NP_175113.2 
Orthologous [Ortholog page] LOC4327802 (osa)  LOC7478673 (ppo)  LOC7478754 (ppo)  LOC7488856 (ppo)  LOC25482046 (mtr)  LOC25485314 (mtr)  LOC100243779 (vvi)  LOC100777778 (gma)  LOC100796870 (gma)  LOC100806019 (gma)  LOC100819928 (gma)  LOC101256011 (sly)  LOC101267083 (sly)  LOC103651641 (zma)  LOC103651644 (zma)  LOC103849529 (bra) 
Subcellular
localization
wolf
chlo 5,  nucl 4  (predict for NP_001117438.1)
chlo 5,  nucl 4  (predict for NP_175113.2)
Subcellular
localization
TargetP
chlo 3,  other 3  (predict for NP_001117438.1)
chlo 3,  other 3  (predict for NP_175113.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with PRP40A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.7 AT5G55660 DEK domain-containing chromatin associated protein [detail] 835660
10.1 AT4G08310 DNA ligase [detail] 826385
9.6 AT1G80810 Tudor/PWWP/MBT superfamily protein [detail] 844420
9.4 AT1G10320 Zinc finger C-x8-C-x5-C-x3-H type family protein [detail] 837571
9.2 ELF8 binding protein [detail] 815177
8.7 AT3G09360 Cyclin/Brf1-like TBP-binding protein [detail] 820092
4.5 AT5G37130 Protein prenylyltransferase superfamily protein [detail] 833685
Coexpressed
gene list		 [Coexpressed gene list for PRP40A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261333_at
261333_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261333_at
261333_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261333_at
261333_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841057      
Refseq ID (protein) NP_001117438.1 
NP_175113.2 


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