[←][→] ath   AT1G65700 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0016070 [list] [network] RNA metabolic process  (1305 genes)  IMP  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001031238.1  NP_001185323.1  NP_176747.1 
BLAST NP_001031238.1  NP_001185323.1  NP_176747.1 
Orthologous [Ortholog page] LOC4339810 (osa)  LOC7463898 (ppo)  LOC25493016 (mtr)  LOC100247782 (vvi)  LOC100284021 (zma)  LOC100305829 (gma)  LOC100809048 (gma)  LOC101267415 (sly)  LOC103831065 (bra)  LOC103852294 (bra) 
Subcellular
localization
wolf
cyto 3,  cyto_E.R. 3,  E.R. 1,  chlo 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_001031238.1)
cyto 4,  chlo 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_001185323.1)
cyto 3,  cyto_E.R. 3,  E.R. 1,  chlo 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_176747.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001031238.1)
other 8  (predict for NP_001185323.1)
other 7  (predict for NP_176747.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03018 RNA degradation 2
Genes directly connected with LSM8 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.9 RUXF small nuclear ribonucleoprotein F [detail] 829145
6.9 AT2G47640 Small nuclear ribonucleoprotein family protein [detail] 819377
6.8 AT3G18510 ATP-dependent helicase/nuclease subunit [detail] 821381
6.3 PFD3 prefoldin 3 [detail] 835011
Coexpressed
gene list		 [Coexpressed gene list for LSM8]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262931_at
262931_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262931_at
262931_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262931_at
262931_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842881      
Refseq ID (protein) NP_001031238.1 
NP_001185323.1 
NP_176747.1 


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