[←][→] ath   AT1G76860 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0033962 [list] [network] cytoplasmic mRNA processing body assembly  (11 genes)  IBA  
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (71 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (7 genes)  IBA  
GO:0005688 [list] [network] U6 snRNP  (11 genes)  IBA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0000932 [list] [network] P-body  (56 genes)  IBA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_177812.1 
BLAST NP_177812.1 
Orthologous [Ortholog page] LSM3A (ath)  LOC4325074 (osa)  LOC7469218 (ppo)  LOC11446185 (mtr)  LOC100194361 (zma)  LOC100253870 (vvi)  LOC100306547 (gma)  LOC100499782 (gma)  LOC101264277 (sly)  LOC103830597 (bra)  LOC103832139 (bra)  LOC103853050 (bra)  LOC103872911 (bra) 
Subcellular
localization
wolf
cyto 4,  extr 2,  cyto_nucl 2,  cyto_pero 2,  cyto_plas 2  (predict for NP_177812.1)
Subcellular
localization
TargetP
other 8  (predict for NP_177812.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath04141 Protein processing in endoplasmic reticulum 3
ath03040 Spliceosome 2
ath03010 Ribosome 2
Genes directly connected with LSM3B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.7 AT2G36130 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [detail] 818186
6.7 RBX1 RING-box 1 [detail] 832179
6.6 AT5G09225 transmembrane protein [detail] 2745982
5.2 AT1G10865 cytochrome C oxidase assembly factor [detail] 5007681
Coexpressed
gene list		 [Coexpressed gene list for LSM3B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256333_at
256333_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256333_at
256333_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256333_at
256333_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844021      
Refseq ID (protein) NP_177812.1 


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